Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_F15
(824 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.0
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 5.3
AC024785-2|AAF60599.2| 467|Caenorhabditis elegans C-type lectin... 29 5.3
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 9.3
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 9.3
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 9.3
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 9.3
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 9.3
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.1 bits (67), Expect = 1.0
Identities = 30/78 (38%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +2
Query: 578 GSPSSVSPPGNAPGG-TLDPLVGTQLFGPPTKIWY*GF-PCSIPPHGT*AQP*EGTSLPG 751
G+P S PP PGG P G +GPP GF P PP G P G + P
Sbjct: 418 GAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPT----GFPPVGAPPPGAAGAP--GGN-PF 470
Query: 752 IVAPS*TARATYRGSPXQ 805
PS T YR SP Q
Sbjct: 471 ARGPSATG---YRQSPYQ 485
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 663 GGPNNWVPTSGSNVPPG--AFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 520
G P N P+ G+ PPG PGG DG+P G G++T QQ
Sbjct: 190 GAPGN-TPSGGAAGPPGPPGPPGGPGNDGQPGGPGNPGAPGAVTEVPGQQ 238
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/58 (37%), Positives = 25/58 (43%)
Frame = +2
Query: 578 GSPSSVSPPGNAPGGTLDPLVGTQLFGPPTKIWY*GFPCSIPPHGT*AQP*EGTSLPG 751
G P PPG+A G D G Q GPP + G P + P G P G LPG
Sbjct: 224 GPPGPGGPPGDAGGAGSDGAPGPQ--GPPGQD---GTPGNAGPDGQPGSP-GGPGLPG 275
>AC024785-2|AAF60599.2| 467|Caenorhabditis elegans C-type lectin
protein 71 protein.
Length = 467
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 416 AYIRLHQKYTKQLFISNDVFMIMHVSYRLF*FAAKKKQMVDYFHDYS 276
AY + Y Q SN + V++ + F ++ Q + YF+DY+
Sbjct: 181 AYSNDFEPYIVQNTFSNSILYKQQVTFAIIRFDTRQPQSIMYFNDYN 227
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.9 bits (59), Expect = 9.3
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +2
Query: 572 YKGSPSSVSPPGNAPGGTLDPLVGTQ-LFGPPTKIWY*GFPCSIPPHGT*AQP*EGTSLP 748
Y G+P P GN G L G + L GP G P + G + +P
Sbjct: 388 YPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPGAPGVSGP-------SGIP 440
Query: 749 GIVAPS*TARATYRGSPXQSCP 814
G+ P YRG+P QS P
Sbjct: 441 GLPGPK--GEPGYRGTPGQSIP 460
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 9.3
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +2
Query: 572 YKGSPSSVSPPGNAPGGTLDPLVGTQ-LFGPPTKIWY*GFPCSIPPHGT*AQP*EGTSLP 748
Y G+P P GN G L G + L GP G P + G + +P
Sbjct: 387 YPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPGAPGVSGP-------SGIP 439
Query: 749 GIVAPS*TARATYRGSPXQSCP 814
G+ P YRG+P QS P
Sbjct: 440 GLPGPK--GEPGYRGTPGQSIP 459
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.9 bits (59), Expect = 9.3
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +2
Query: 572 YKGSPSSVSPPGNAPGGTLDPLVGTQ-LFGPPTKIWY*GFPCSIPPHGT*AQP*EGTSLP 748
Y G+P P GN G L G + L GP G P + G + +P
Sbjct: 387 YPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPGAPGVSGP-------SGIP 439
Query: 749 GIVAPS*TARATYRGSPXQSCP 814
G+ P YRG+P QS P
Sbjct: 440 GLPGPK--GEPGYRGTPGQSIP 459
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.9 bits (59), Expect = 9.3
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +2
Query: 572 YKGSPSSVSPPGNAPGGTLDPLVGTQ-LFGPPTKIWY*GFPCSIPPHGT*AQP*EGTSLP 748
Y G+P P GN G L G + L GP G P + G + +P
Sbjct: 388 YPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPGAPGVSGP-------SGIP 440
Query: 749 GIVAPS*TARATYRGSPXQSCP 814
G+ P YRG+P QS P
Sbjct: 441 GLPGPK--GEPGYRGTPGQSIP 460
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.9 bits (59), Expect = 9.3
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +2
Query: 572 YKGSPSSVSPPGNAPGGTLDPLVGTQ-LFGPPTKIWY*GFPCSIPPHGT*AQP*EGTSLP 748
Y G+P P GN G L G + L GP G P + G + +P
Sbjct: 424 YPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPGAPGVSGP-------SGIP 476
Query: 749 GIVAPS*TARATYRGSPXQSCP 814
G+ P YRG+P QS P
Sbjct: 477 GLPGPK--GEPGYRGTPGQSIP 496
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,178,020
Number of Sequences: 27780
Number of extensions: 477839
Number of successful extensions: 1271
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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