Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F14
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    28   0.88 
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    28   1.2  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   8.2  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = -3

Query: 483 VLKTIWKGTVSTIKIETTLFPL*RHCFSYRNLIPSIIYL*SDRASLASLNYFFNTVHIVL 304
           V +  W  T+S I   ++   +      YR+L+     L  D     +LN + +   I  
Sbjct: 767 VNRRFWVQTLSDIGKGSSAIRIAEKYSDYRSLVELCYQLYEDNELTDALNNYLDLFGIKF 826

Query: 303 NYILYSVFVFN 271
            +ILY  FV N
Sbjct: 827 AFILYDYFVEN 837


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = -1

Query: 242 KTLETMLCYVRKQNVGTTVVIPTFCFVQWNGLYEVSSELDINSVRFFNIIIKISDFC**R 63
           K +E  LCY    NV      P+F +V  + L +    L I  VR + I+++ +D    +
Sbjct: 532 KQIECYLCYTESSNVSNDEPHPSFEYV--SRLSQYIYLLRIALVRLYTILMENNDSSQRK 589

Query: 62  SDVKREKNDNIGSAXATKQK 3
                 K +N+ S   T ++
Sbjct: 590 PLSVDPKQENVSSTVETAKQ 609


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 435 TTLFPL*RHCFSYRNLIPSIIY 370
           T ++PL  HCF  ++L+P + Y
Sbjct: 106 TKIYPL-PHCFIVKDLVPDLTY 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,092
Number of Sequences: 5004
Number of extensions: 44113
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)