Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F13
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    26   1.6  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   2.1  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   3.7  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   3.7  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    24   4.9  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    24   4.9  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    24   6.5  

>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 270 WSTAISRVNSAATQPTPTASQPS-GEGRKGSDVQSYKYTESFSFRDGL-QPSNRSRTS 103
           WS A+S  +S A  P P+ S P+ G  + G    S K +  F+  + +  P   SR S
Sbjct: 69  WSGALSLASSRAASPAPSDSFPTFGYSQLGGLENSSKGSALFNSANSIGTPYLSSRNS 126


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 282 IP*TWSTAISRVNSAATQPTPTASQPSGEGRKGSDVQSYKYTESFSFRDGLQP 124
           IP   S   SRV S + Q     +QP    ++   VQSY+  +S      +QP
Sbjct: 340 IPPNTSNIGSRVVSRSGQNNNQPAQPGQYNQQSQPVQSYQSGQSTQHFQPVQP 392


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -1

Query: 303 WRSFIIDIP*TWSTAISRVNSAATQPTPTA---SQPSGEGRKGSDVQSYKYTES 151
           W  F  DIP TW    S V  AA   +  A   ++P  E  K  DV S +  E+
Sbjct: 226 WDCFQDDIPQTWLVEFSSVCQAAESISLIAVNNNRPPVELPKSGDVLSNREWEA 279


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 36  FLTTPEVTVNRLLILQHFSFYPH 104
           FLT     +N L    HF F PH
Sbjct: 152 FLTVFSANLNALNFYHHFDFVPH 174


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = -1

Query: 267 STAISRVNSAATQPTPTASQPSGEGRKGSDVQSYKYTESFSFRDGLQPSNRSRTSA 100
           S A++       + TP  SQ        SD+ +Y Y +   +R     SN ++  A
Sbjct: 466 SAALNLPRDTDIKATPNLSQSGNINSDNSDLSNYPYNDYRVYRMSHCSSNSNKVLA 521


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -1

Query: 261 AISRVNSAATQPTPTASQPSGEGRKGSDVQSYKYTESFSFRDGLQPSNRSRTSA 100
           AI++  +   +PT    Q     +   + +SY Y+ S ++   L  SNRS+++A
Sbjct: 16  AINQYKNEKAEPT----QVLDAAKANKNTRSYPYSVSRNYSFILNKSNRSKSTA 65


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 243 SAATQPTPTASQPSGEGRKGSDVQSYKYTESFSF 142
           S ++ PTP  S  SG+   G  + +Y    S SF
Sbjct: 704 SFSSPPTPHRSPFSGQAFTGMGLSNYSLMSSSSF 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,060,149
Number of Sequences: 5004
Number of extensions: 16658
Number of successful extensions: 43
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)