Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F13
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical pr...    29   1.0  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    27   2.3  
AC199241-1|ABO33279.1|  343|Caenorhabditis elegans Hypothetical ...    27   3.1  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    26   5.4  
Z81530-4|CAB04308.2|   70|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z78019-5|CAB01455.1|  305|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U21302-2|AAA92287.1|  305|Caenorhabditis elegans RNP-1 protein.        25   9.5  

>U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical
           protein F54H5.5 protein.
          Length = 662

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = -1

Query: 321 MNSAGRWRSFIIDIP*TWSTAISRVNSAATQPTPTASQPSGEGRKGSDVQSYKYTESF-- 148
           M+     R F+ D+     T  SR   A+     T+  P+ + R+ S +Q    T  F  
Sbjct: 91  MDKTTHERGFLADVSDMNGTVRSR--QASFHFNYTSPVPAEKTRRSSGIQHANSTIDFDA 148

Query: 147 ---SFRDGLQPSNRSRTSAGRKKNV 82
              SF D  Q   RSR  AGR+ ++
Sbjct: 149 DVSSFFDSTQIHRRSRQQAGREPSI 173


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
            protein Y47G6A.29 protein.
          Length = 2460

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 300  RSFIIDIP*TWSTAISRVNSAATQPTPTA 214
            R  I+ +P   +TAI+ ++S A  PTPTA
Sbjct: 1494 RPIILLLPDKSTTAITPIHSPANAPTPTA 1522


>AC199241-1|ABO33279.1|  343|Caenorhabditis elegans Hypothetical
           protein 2RSSE.1 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -1

Query: 261 AISRVNSAATQPTPTASQP---SGEGRKGS 181
           AI     A+ +PTPT S+P   +G GR GS
Sbjct: 277 AIHLAEEASPEPTPTTSKPPRGNGVGRAGS 306


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -1

Query: 267  STAISRVNSAATQPTPTASQPSGEGRKGSDVQSYKYTESFSFRDGLQPSNRSRTSAG 97
            ST I + +S+++  +PT++QP+    + S   +   T S S      P+ +S T AG
Sbjct: 910  STTIPQGSSSSSPQSPTSAQPA----QSSSTSAATVTVSSSQSPTSSPAQQSSTPAG 962


>Z81530-4|CAB04308.2|   70|Caenorhabditis elegans Hypothetical
           protein F36D1.5 protein.
          Length = 70

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 249 VNSAATQPTPTASQPSGEGRKGSDVQSYK 163
           V    T+P P A+  +GE +KG   +++K
Sbjct: 26  VGGTETKPKPPATGTAGEHKKGKGAKNHK 54


>Z78019-5|CAB01455.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK863.7 protein.
          Length = 305

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 267 STAISRVNSAATQPTPTASQPSGEGRKGSDVQSYK 163
           STA   ++S++T P P AS P G  +  +   SY+
Sbjct: 191 STAGFALSSSSTVPVPVASAPPGATQLSAAPVSYQ 225


>U21302-2|AAA92287.1|  305|Caenorhabditis elegans RNP-1 protein.
          Length = 305

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 267 STAISRVNSAATQPTPTASQPSGEGRKGSDVQSYK 163
           STA   ++S++T P P AS P G  +  +   SY+
Sbjct: 191 STAGFALSSSSTVPVPVASAPPGATQLSAAPVSYQ 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,797,608
Number of Sequences: 27780
Number of extensions: 91721
Number of successful extensions: 274
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)