Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F13
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.30 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   2.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   2.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.30
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -1

Query: 264 TAISRVNSAATQPTPTASQPSGEGRKGSDVQSY--KYTESFSFRDGLQPSNRSRTSAG 97
           T++ +   A        ++     R+  DV        E F+F++GL    R+RT  G
Sbjct: 576 TSVQKKGDAGVYTCSARNKQGHSARRSGDVAVIVPPIIEPFTFQEGLSEGMRTRTVCG 633


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 265 YSNISS*QCSNSTYAHRF 212
           +SN+   +C+N TYA ++
Sbjct: 39  HSNVYQYRCANCTYATKY 56


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 270 WSTAISRVNSAATQP 226
           W TA+   +SAAT P
Sbjct: 354 WMTALGTASSAATLP 368


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 247 NSRYCCRPSSR 279
           N+RYC  P+ R
Sbjct: 144 NTRYCLTPTER 154


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 247 NSRYCCRPSSR 279
           N+RYC  P+ R
Sbjct: 197 NTRYCLTPTER 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,929
Number of Sequences: 438
Number of extensions: 1188
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)