Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_F11
(520 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 31 0.65
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 31 0.65
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 31 0.65
Z70753-12|CAA94761.2| 585|Caenorhabditis elegans Hypothetical p... 28 3.5
AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven transme... 28 4.6
AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical ... 28 4.6
Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical p... 27 8.0
Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical pr... 27 8.0
AC084152-7|AAK39310.1| 172|Caenorhabditis elegans Hypothetical ... 27 8.0
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 30.7 bits (66), Expect = 0.65
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Frame = -3
Query: 485 VLVALCSGAPQXNPQDVQILRFDSNVEPDGY--------SFAYETSDGTSRQEEGKLDNP 330
VLV GA + +P D +PDG +F E D ++ EEGK P
Sbjct: 4301 VLVPSDEGATKTHPTDETSDAVHPITKPDGTPLATDSTGNFVTENGDVITKDEEGKPLGP 4360
Query: 329 QSENAALTVTGQYAY--VAPDGK 267
+ +G Y Y + PDG+
Sbjct: 4361 NGQILPTDASGNYIYPVIGPDGQ 4383
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = -3
Query: 392 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY----VAPDGKHYTVTFTAGPNG 231
SF E D EEGK P E A +G Y Y V P + VT GP+G
Sbjct: 5048 SFVTENGDRIEFNEEGKPLGPDGEVLATDASGNYVYPGSVVEPTAEPQEVTH--GPDG 5103
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 392 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 267
SF E + R E+GK P + +G Y Y V PDG+
Sbjct: 4485 SFVTEGGEIVERDEDGKPLGPDGQVLPTDASGNYIYPVVGPDGQ 4528
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 392 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 267
SF + + +EGK P + + +G Y Y V PDG+
Sbjct: 7872 SFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDGQ 7915
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 30.7 bits (66), Expect = 0.65
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Frame = -3
Query: 485 VLVALCSGAPQXNPQDVQILRFDSNVEPDGY--------SFAYETSDGTSRQEEGKLDNP 330
VLV GA + +P D +PDG +F E D ++ EEGK P
Sbjct: 4346 VLVPSDEGATKTHPTDETSDAVHPITKPDGTPLATDSTGNFVTENGDVITKDEEGKPLGP 4405
Query: 329 QSENAALTVTGQYAY--VAPDGK 267
+ +G Y Y + PDG+
Sbjct: 4406 NGQILPTDASGNYIYPVIGPDGQ 4428
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = -3
Query: 392 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY----VAPDGKHYTVTFTAGPNG 231
SF E D EEGK P E A +G Y Y V P + VT GP+G
Sbjct: 5093 SFVTENGDRIEFNEEGKPLGPDGEVLATDASGNYVYPGSVVEPTAEPQEVTH--GPDG 5148
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 392 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 267
SF E + R E+GK P + +G Y Y V PDG+
Sbjct: 4530 SFVTEGGEIVERDEDGKPLGPDGQVLPTDASGNYIYPVVGPDGQ 4573
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 392 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 267
SF + + +EGK P + + +G Y Y V PDG+
Sbjct: 7917 SFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDGQ 7960
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 30.7 bits (66), Expect = 0.65
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Frame = -3
Query: 485 VLVALCSGAPQXNPQDVQILRFDSNVEPDGY--------SFAYETSDGTSRQEEGKLDNP 330
VLV GA + +P D +PDG +F E D ++ EEGK P
Sbjct: 4346 VLVPSDEGATKTHPTDETSDAVHPITKPDGTPLATDSTGNFVTENGDVITKDEEGKPLGP 4405
Query: 329 QSENAALTVTGQYAY--VAPDGK 267
+ +G Y Y + PDG+
Sbjct: 4406 NGQILPTDASGNYIYPVIGPDGQ 4428
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = -3
Query: 392 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY----VAPDGKHYTVTFTAGPNG 231
SF E D EEGK P E A +G Y Y V P + VT GP+G
Sbjct: 5093 SFVTENGDRIEFNEEGKPLGPDGEVLATDASGNYVYPGSVVEPTAEPQEVTH--GPDG 5148
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 392 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 267
SF E + R E+GK P + +G Y Y V PDG+
Sbjct: 4530 SFVTEGGEIVERDEDGKPLGPDGQVLPTDASGNYIYPVVGPDGQ 4573
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 392 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 267
SF + + +EGK P + + +G Y Y V PDG+
Sbjct: 7917 SFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDGQ 7960
>Z70753-12|CAA94761.2| 585|Caenorhabditis elegans Hypothetical
protein F40F9.5 protein.
Length = 585
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +3
Query: 258 SVVLAVRSYVSILSSNCQSCILGL---WVVEFAFFLSGC-TITSFVRKAV 395
+VV + S+ ILSS + I + W FAFF+SGC IT F+ + V
Sbjct: 479 TVVSIIISFSPILSSLIFNNIFNMTLTWWPGFAFFVSGCFQITVFIGQLV 528
>AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven
transmembrane protein protein.
Length = 326
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 273 VRSYVSILSSNCQSCILGLWVV--EFAFFLSGCTIT 374
V Y+ ++ N +C++ + + F FFL+GC+ T
Sbjct: 106 VSEYLCVILENVIACVIAVLIYPPRFTFFLNGCSKT 141
>AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical
protein R01B10.5 protein.
Length = 326
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 273 VRSYVSILSSNCQSCILGLWVV--EFAFFLSGCTIT 374
V Y+ ++ N +C++ + + F FFL+GC+ T
Sbjct: 106 VSEYLCVILENVIACVIAVLIYPPRFTFFLNGCSKT 141
>Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -3
Query: 419 DSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAG 240
D N+ PD Y +ET G+ RQ + +N ++ + P G ++ + G
Sbjct: 562 DFNMSPDDYPAGFET--GSFRQRQDHFNNQNADFFQQRFFKNTQWAKPGGPNFLMIGGEG 619
Query: 239 PN 234
P+
Sbjct: 620 PD 621
>Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -3
Query: 419 DSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAG 240
D N+ PD Y +ET G+ RQ + +N ++ + P G ++ + G
Sbjct: 562 DFNMSPDDYPAGFET--GSFRQRQDHFNNQNADFFQQRFFKNTQWAKPGGPNFLMIGGEG 619
Query: 239 PN 234
P+
Sbjct: 620 PD 621
>AC084152-7|AAK39310.1| 172|Caenorhabditis elegans Hypothetical
protein Y102A11A.7 protein.
Length = 172
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 500 VTVACVL-VALCSGAPQXNPQDVQILRFDSNVEPDGYSFAYETSDGTSRQEEGKLDNP 330
+TV C + + LC+ N Q ++L+F S+ SFAY ++G G +P
Sbjct: 108 LTVICWMGIWLCNRRKDKN-QKKELLKFGSSSSVSNMSFAYPIANGHYHFGTGPFQSP 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,161,634
Number of Sequences: 27780
Number of extensions: 249418
Number of successful extensions: 673
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -