Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F10
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    28   1.3  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    28   1.7  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   5.1  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   6.7  

>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 206 FYVIDLF*MGIPNIVLFLNCCFVPFLSYYDFYEY 105
           FY+   +  GI    + +  C +PFL+ Y +Y++
Sbjct: 241 FYMHSTWRWGIAVWTILIPACSIPFLAVYSYYQF 274


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 79  FYVNVNIVNILFVEHLFCNVTDPSH 5
           FY N+     + VEH+ C VT PS+
Sbjct: 413 FYDNITYTPFVHVEHIGCVVTSPSN 437


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 475 ESCIIWNKFYLIFEFNNKTHKCKIIYLFCKGPVVIAMHAL 356
           +SC+ W     I E N  +H C+I+    +GP+ +  HA+
Sbjct: 241 KSCLSWVATDSIREANIVSHICQIL---VQGPIFLKTHAI 277


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = -1

Query: 323 VGIKNKNNKRRL-ILILKLCEYTVGFNTDVSSFVNTNYKLFYVIDLF*MGIPNIVLFL-- 153
           +GI  K++   L +L+ KLC YT  F T   + + T    F     +   + N+++ L  
Sbjct: 224 LGIDEKSDMWALGVLLYKLCYYTTPFETQGPNAILTASYSFPPFPPYSHSLKNVIIALLQ 283

Query: 152 -NCCFVP 135
            N C  P
Sbjct: 284 PNPCLRP 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,822
Number of Sequences: 5004
Number of extensions: 50618
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)