Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F10
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0055 - 907719-907748,907757-907824,908972-909098                 29   5.3  
04_04_1339 + 32760424-32760584,32762428-32764462                       28   9.3  

>09_01_0055 - 907719-907748,907757-907824,908972-909098
          Length = 74

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -3

Query: 684 YYLHYFAHNLKQNQ--LYNRTIITSIEMVIKFIAN 586
           Y LHY++HN ++NQ  L+   I TS+  ++  + N
Sbjct: 19  YMLHYYSHNPQENQNKLFATKISTSLTSLLVEVEN 53


>04_04_1339 + 32760424-32760584,32762428-32764462
          Length = 731

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 628 NYYKH*NGNKIYSKLIKYAKNN*NFLVMSSENIPGSYFLE 509
           N   H +G K+Y KL +  K +   +  S E+  GS FLE
Sbjct: 58  NLVLHKHGLKLYDKLTENLKGHLKEMCRSIEDAQGSLFLE 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,580,472
Number of Sequences: 37544
Number of extensions: 235365
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)