Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_F08
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0637 - 16465433-16466242 32 0.54
09_04_0600 + 18883094-18883393,18883606-18883755,18883851-188841... 31 1.2
02_05_0317 - 27848993-27849102,27849682-27849886 30 1.6
12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047 30 2.2
10_08_0297 + 16602176-16602553 29 2.9
02_02_0558 + 11477433-11477525,11477632-11477973,11481854-114823... 29 2.9
04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904 28 6.6
04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042 28 6.6
08_02_1258 - 25670092-25670152,25671124-25671327,25671400-256716... 28 8.8
02_01_0523 - 3792864-3792962,3793509-3793610,3793861-3793974,379... 28 8.8
>05_03_0637 - 16465433-16466242
Length = 269
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 466 PPPRSAAASTLASESDTRQRTTLPPRSPL 552
PPP S+AA+ AS S T+ PP PL
Sbjct: 113 PPPPSSAAAAAASSSSAASSTSAPPLRPL 141
>09_04_0600 +
18883094-18883393,18883606-18883755,18883851-18884142,
18884697-18884858,18884958-18885021,18887573-18888080
Length = 491
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = +1
Query: 445 VARSGRGPPPRSAAASTLASESDTRQRTTLPPRSPLSTWRSYCS 576
V R G PPPR AAA T + L RS L+T RS C+
Sbjct: 111 VTRFGTAPPPRRAAARVSLRRQQTSRDGALLLRS-LTTTRSRCA 153
>02_05_0317 - 27848993-27849102,27849682-27849886
Length = 104
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 436 RHDVARSGRGPPPRSAAASTLASESDTRQRTTLPPRSPLS 555
R D+A S RG R ++ A E D ++R P SPL+
Sbjct: 17 RPDIANSDRGGGHRRSSRPRSAKEEDAKKRRASQPPSPLA 56
>12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047
Length = 162
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/51 (41%), Positives = 26/51 (50%)
Frame = -1
Query: 494 VDAAALRGGGPRPDRATSCRGAVLVLVLEHEPALGGQRPASAQLVQQHGGA 342
V A + G + ATSC G V V V E E +LGG + A+ V GGA
Sbjct: 5 VVGAGVSGLAAAHELATSCAGGVDVTVYEKEDSLGG---SFARTVGVDGGA 52
>10_08_0297 + 16602176-16602553
Length = 125
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 466 PPPRSAAASTLASESDTRQRTTLPPRSPLSTWRS 567
PPPR A+S+ A+E+ T L SPLS+ R+
Sbjct: 6 PPPRPPASSSAAAEARVLPPTMLHAPSPLSSRRA 39
>02_02_0558 +
11477433-11477525,11477632-11477973,11481854-11482381,
11482459-11482956
Length = 486
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -1
Query: 473 GGGPRPDRATSCRGAVLVLVLEHEPALGGQRPASAQLVQQHGG 345
GGG R + A + A VL+LEH PA GG P++ GG
Sbjct: 35 GGGDREEEAAA-EAAPEVLLLEHFPA-GGTSPSAEGTGNDQGG 75
>04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904
Length = 207
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -1
Query: 464 PRPDRATSCRGA--VLVLVLEHEPALGGQRPASAQLVQQHGGAPHRQRPRG 318
PR A S R + +LV V EP LGG A GG ++PRG
Sbjct: 32 PRAPAALSLRPSARLLVAVAASEPELGGSGGGGAGDGSGSGGGGDSEKPRG 82
>04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042
Length = 360
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 436 RHDVARSGRGPPPRSAAASTLASESDTRQRTTLPP 540
R ++ + PPP ++S +++E RQR LPP
Sbjct: 41 RRTLSSASSLPPPWRPSSSPISAERSRRQRRRLPP 75
>08_02_1258 -
25670092-25670152,25671124-25671327,25671400-25671611,
25671701-25671749,25671833-25672612,25672696-25672767,
25672907-25672954,25673053-25673127,25673238-25673312,
25673614-25673668,25673931-25674016,25674759-25674988
Length = 648
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 442 DVARSGRGPPPRSAAASTLASESDTRQRTTLPPRSP 549
+VAR+ PPP A+AST R +LPP P
Sbjct: 3 EVARASASPPP--ASASTGGDRKRGRSSPSLPPPPP 36
>02_01_0523 -
3792864-3792962,3793509-3793610,3793861-3793974,
3794060-3794158,3794725-3794779,3795266-3795433,
3795668-3795735,3796133-3796195,3796425-3796703
Length = 348
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 469 PPRSAAASTLASESDTRQRTTLPPRSPLSTWRSYCSK 579
PP +AAA+ A+ S R TT PR P+ R+ S+
Sbjct: 8 PPTAAAAAAAAASSHRRNGTT-SPRGPVLGLRALASR 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.122 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,397,035
Number of Sequences: 37544
Number of extensions: 215507
Number of successful extensions: 1046
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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