Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F08
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    29   2.6  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       29   2.6  
AL034488-3|CAA22456.1|  504|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z69663-2|CAA93509.2|  819|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
            protein 40 protein.
          Length = 1415

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 442  DVARSGRGPPPRSAAASTLASESDTRQRTTLPPRSPLST 558
            D  R+ RG PP S+AA+ L S +     T  PP S  S+
Sbjct: 1260 DGYRTLRGTPPNSSAANALRSFTQLAGATPPPPHSAASS 1298


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 442  DVARSGRGPPPRSAAASTLASESDTRQRTTLPPRSPLST 558
            D  R+ RG PP S+AA+ L S +     T  PP S  S+
Sbjct: 1260 DGYRTLRGTPPNSSAANALRSFTQLAGATPPPPHSAASS 1298


>AL034488-3|CAA22456.1|  504|Caenorhabditis elegans Hypothetical
           protein Y54G11A.3 protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 488 AAALRGGGPRPDRATSCRGAVLVLV 414
           +  L GGG RP++  +CRG V +++
Sbjct: 193 SVCLYGGGSRPEQVEACRGGVEIVI 217


>Z69663-2|CAA93509.2|  819|Caenorhabditis elegans Hypothetical
           protein K02B9.2 protein.
          Length = 819

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 475 RSAAASTLASESDTRQRTTLPPRSPLSTWRSYCSK 579
           R+  + T+A E+D R  +  PPRS     ++Y S+
Sbjct: 97  RTNQSGTIAQETDNRNASNFPPRSTTRRGQTYESR 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.122    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,482,978
Number of Sequences: 27780
Number of extensions: 145526
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)