Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F07
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    28   1.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.7  
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.7  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   6.3  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   8.3  

>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = -1

Query: 605 EQVKELLKDVLHILYEYLKTFEVSDYIRAYEIFIACSSNTKKQFIMELTEFIGNHLSRQM 426
           E  K L   +    ++YL T +   Y   +++  + +SNTK   I  L +++ NH+ R++
Sbjct: 410 EDPKMLSNSLFISQFDYLITEDPESYNDTFDVIESVNSNTK---IPILPKWLSNHIPREI 466


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 590  LLKDVLHILYEYLKTFEVSDYIRAYEIFIACSSNTKKQFIMELTE 456
            L+  VLH + ++ + F +SDYIR   +      + + + ++ L E
Sbjct: 1645 LMLVVLHKIVDHREAFPISDYIRRAYVLSELEKSIRMEKLLGLVE 1689


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +1

Query: 481 FFVFELQAMKISYALI*SLTSKVFKYSYNICRTSFNSSFTCSHISRNGTTLEVEKPAAPP 660
           FF FE   + +S+A +      +F  + +    S   SFTC       ++L ++  A PP
Sbjct: 57  FFFFESFLLPLSFAHLIKQRKLIFNKAIDFKLNSLCCSFTCYPSILFASSLPIQFIALPP 116

Query: 661 IGRPNSFKF 687
                 FKF
Sbjct: 117 TVFLLFFKF 125


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 324 TFLYFFTSLCKNSIPGGPFDITMVMNLKSQC 232
           TF Y   + C N+I GG  +I  V    +QC
Sbjct: 49  TFTYLDPAYCYNNICGGSDNIAFVAIRNNQC 79


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -1

Query: 626 VPLREIWEQVKEL---LKDVLHILYEYLKTF 543
           V LR++W+ V+E    L+ VL ++YE    F
Sbjct: 580 VDLRKVWDSVREWRSNLRGVLQLVYETFPKF 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,827
Number of Sequences: 5004
Number of extensions: 57748
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)