Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F07
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0540 + 3957622-3960903                                           34   0.100
09_02_0596 - 11070744-11071137,11071270-11071459,11073261-110733...    29   5.0  
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643...    29   5.0  
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591...    28   6.6  
02_05_0363 - 28297295-28298167                                         28   8.7  
01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384           28   8.7  

>01_01_0540 + 3957622-3960903
          Length = 1093

 Score = 34.3 bits (75), Expect = 0.100
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = -1

Query: 725 TTASTYXIRLTIGNLNEFGRPMGGAAGF---STSRVVPLREIWEQVKELLKDVLHILYEY 555
           TT S     +T+G +   G   GGAA F   +  R V   E+W +      + L + Y Y
Sbjct: 458 TTFSATRRSITVGQITSIG---GGAAHFPPLTFQRTVHPMELWSRFGVTGGEPLSLAYSY 514

Query: 554 LKTFEVSDYIRAYEIF 507
            KT +  +++R  E F
Sbjct: 515 TKTKQAGEFLRRSEPF 530


>09_02_0596 -
           11070744-11071137,11071270-11071459,11073261-11073387,
           11073559-11073821,11075779-11075797
          Length = 330

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 584 KDVLHILYEYLKTFEVSDYIRAYE 513
           KD L ++YEY+ +  +SDY+R  E
Sbjct: 116 KDHLALVYEYMSSGNLSDYLRGLE 139


>02_05_1170 +
           34663853-34663928,34664038-34664078,34664317-34664386,
           34664499-34664647,34664784-34664879,34665406-34665476,
           34665637-34665698,34665778-34665841,34665950-34666034,
           34666129-34666255,34666381-34666454,34666539-34666599,
           34666683-34666771,34666897-34667206,34667763-34667815,
           34668299-34668370,34668648-34668914,34669015-34669047,
           34669163-34669245,34669522-34669594,34669834-34670170,
           34670302-34670633,34670816-34671135,34671261-34671612,
           34671691-34671906
          Length = 1170

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -1

Query: 665 PMGGAAGFSTSRVVPLREIWEQVKELLKDVLHILYEYLKTFEVSDYIRAYEIFIACSSNT 486
           P G + G  T  V  L  I  Q+KE     +++LY +L    + ++  A E++++  +  
Sbjct: 759 PCGTSEGLKTDLVAVLSRIENQLKEEGLGWMNVLYVHLFISSMKEFGLANEVYVSFITEQ 818

Query: 485 K 483
           K
Sbjct: 819 K 819


>04_04_0532 +
           26058100-26058229,26058355-26058559,26058678-26059157,
           26059262-26059354,26059526-26059636,26059720-26059792,
           26060072-26060208,26061040-26061097
          Length = 428

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 571 CRTSFNSSFTCSHISRNGTTLEVEKPAAPP 660
           C  S + S+T S  S + +T +V+ P APP
Sbjct: 62  CTDSSSGSYTDSFASSSSSTFQVKGPQAPP 91


>02_05_0363 - 28297295-28298167
          Length = 290

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +1

Query: 568 ICRTSFNSSFTCSHISRNGTTLEVEKPAAPPIGRPNSFK---FPIVSRXK 708
           +C T  N        ++NG +     PAAPP     +F     P VSR K
Sbjct: 16  VCATCLNDRLLALAAAQNGASSSPPPPAAPPAAAAPAFPRSVSPYVSRRK 65


>01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384
          Length = 335

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 206 GPPLLRFY*HCDFKFITIVMSNGPPGM 286
           GP L  F  H D + I+++ SNG PG+
Sbjct: 200 GPNLTGFGEHTDPQIISVLRSNGAPGL 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,658,089
Number of Sequences: 37544
Number of extensions: 347127
Number of successful extensions: 764
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)