Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F05
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    54   3e-08
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ...    28   1.5  
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    27   1.9  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   2.6  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   2.6  
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    27   3.4  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   5.9  
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1...    26   5.9  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.8  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    25   7.8  

>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 1/157 (0%)
 Frame = -3

Query: 677 KDDFITNIKRTLYIRYAKLLNCKYIFXXXXXXXXXXXXXXXLAIGRGSQVQSDVGFLDSR 498
           + D +  I+  L + YA+  NC  I                +A GRG  +          
Sbjct: 168 RQDLLYRIRDKLLVSYARKANCDTIVFGDSGTTIAARVLELVAEGRGFAIPWYTSVCSKL 227

Query: 497 -DMEIKIIRPMKDISEEELKLYINSKNLKVNDKQTSKENEHTSLQTVISTFVSSLQENFP 321
            + +  ++RP++++   +LK Y+N K L   D     E    ++  V  ++ SSL + FP
Sbjct: 228 PNCDTFLLRPLREVLSSDLKSYMNIKGLAFCDSLI--EARPNTIHGVTESYFSSLNDTFP 285

Query: 320 STISTICKTADKIGLQDECDNERHNMCVICQSILKPD 210
           S +ST+ K + K+ +          +C IC   ++ D
Sbjct: 286 SLVSTVVKMSSKLHVP-----STEAICTICNLPMQED 317


>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -3

Query: 209 EKAISALDATSISKIVSLRKHTDSAIDVDMEKNVINSTIFPYIH--NRLCYACSRNYARN 36
           EK+    +    S++   + H D+ ID+    +++NS   PY    + +C++ S  + R 
Sbjct: 54  EKSNVNFNQRDFSRLNEFKGHFDTVIDIGCFHSILNSDHEPYTASLSHICHSDSSVFLRA 113

Query: 35  *TKQNTKLHYR 3
            ++ N K  YR
Sbjct: 114 FSETN-KSRYR 123


>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -3

Query: 209 EKAISALDATSISKIVSLRKHTDSAIDVDMEKNVINSTIFPYIH--NRLCYACSRNYARN 36
           EK+    +    S++   + H D+ ID+    +++NS   PY    + +C++ S  + R 
Sbjct: 54  EKSNVNFNQRDFSRLNEFKGHFDTVIDIGCFHSILNSDHEPYTASLSHICHSDSSVFLRA 113

Query: 35  *TKQNTKLHYR 3
            ++ N K  YR
Sbjct: 114 FSETN-KSRYR 123


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
 Frame = -3

Query: 509 LDSRDMEIKIIRPMKDISEEELKLYINSKNLKVNDKQTSKENEHTS---LQTVISTFVSS 339
           L+  ++EI+++R       E+L+   + K+  ++  + S +   T+       +S + + 
Sbjct: 326 LEFYEIEIEVLRE----KVEKLQALSDEKDFYISKLEKSLDRNDTTPVPSDEKLSNYAAE 381

Query: 338 LQENFPSTISTICKTADKIGLQDECDNER 252
            +EN  S IS +  T +++ + +E DNER
Sbjct: 382 -KENLVSRISELEHTIEQLTINNERDNER 409


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = -1

Query: 127 WTWRKMLLTQQYFLIFIIVYVMLAVEIMQEIKQSKIPSY 11
           W W + + +   FL  I++Y+      ++ I ++K+  Y
Sbjct: 293 WRWTEYITSFMGFLSIILIYLFCEETYLKTITENKVQEY 331


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 455 EEELKLYINSKNLKVNDKQTSKENEHTSLQTVIST 351
           EEE+ +   SK +  +     KE  HT  Q  I T
Sbjct: 404 EEEISVVSKSKEISSSVSSVGKEQNHTEKQVAIET 438


>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 112 MLLTQQYFLIFIIVYVMLAVEI 47
           M  T  + L+FI+++ +LAV++
Sbjct: 69  MFFTSSFMLLFIVIFTLLAVDL 90


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 209 HQVSRCFDK*HTYYAFHCHIHLVIQFYQQFYIL--LKLWKENFLANC 343
           H++S+        +AF   + LV+   Q F++   +  WK  F++ C
Sbjct: 391 HRISKTNKSIEGVFAFSISVFLVLHLTQAFHVCPSVTFWKTLFMSLC 437


>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -3

Query: 209 EKAISALDATSISKIVSLRKHTDSAIDVDMEKNVINSTIFPYIH--NRLCYACSRNYARN 36
           EK+    +    S++   + H D+ ID+    +++NS   P+    + +C++ S  + R 
Sbjct: 54  EKSNVNFNQRDFSRLNEFKGHFDTVIDIGCFHSILNSDHEPHTASLSHICHSDSSVFLRA 113

Query: 35  *TKQNTKLHYR 3
            ++ N K  YR
Sbjct: 114 FSETN-KSRYR 123


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -3

Query: 482 IIRPMKDISEEEL-KLYINSKNLKVNDK--QTSKENEHTSLQTVISTFVSS-LQENFPST 315
           +++P   +    L KL       KVND    TS +    SL   IS    + +++N P +
Sbjct: 443 MLKPTLQLQNSPLSKLVPQEVGNKVNDSIHTTSNQPSKFSLNPSISLKGDNVIEKNLPFS 502

Query: 314 ISTICKTADK 285
           +ST+  TA K
Sbjct: 503 VSTLKSTAKK 512


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 467 KDISEEELKLYINSKNLKVNDKQTSKENE 381
           K + E+E+  Y+   NL  +DK  S E++
Sbjct: 607 KYVFEDEVSEYMQQSNLNTSDKSMSMEDQ 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,892
Number of Sequences: 5004
Number of extensions: 51093
Number of successful extensions: 162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)