Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_F05
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 31 1.2
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771... 31 1.2
11_01_0214 - 1682731-1682744,1683597-1683640,1684284-1684372,168... 29 2.7
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 29 2.7
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 29 2.7
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855... 29 3.5
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 29 4.7
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 28 6.2
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127... 28 6.2
01_01_0433 + 3282195-3285185 28 6.2
>07_01_0353 +
2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +1
Query: 106 ITFFSMSTSIAESVCFLNETILEILVASKAEIAFSSGFKML*QITHI 246
+ F S++ + +S+C ++ L++L AS+ +I+ GF L + H+
Sbjct: 319 LEFLSVAQNRLKSLCMASQPRLQVLAASRNKISVLKGFPHLPSLEHL 365
>03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,
7712019-7712214,7712449-7712832,7712884-7714804,
7714906-7714966,7715952-7716371
Length = 1059
Score = 30.7 bits (66), Expect = 1.2
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = -3
Query: 497 DMEIKIIRPMKDISEEELKLYINSKNLK-VNDKQTSKENEHTSLQTVISTFVSSLQENFP 321
++ K++ K S E +L +++ K + ++ ENE LQ+ I + L +
Sbjct: 823 ELTSKLVASEKSNSLAETQLKCMAESYKSLESRKAELENEIKVLQSKIEVLTAELDDERQ 882
Query: 320 STISTICKTADKIGLQDECDNERHNMCVICQSILK-PDEKAISA 192
+ I + D + +NER++MCV + K EK I+A
Sbjct: 883 NHQEDITRYRDLEEKIERYENERNSMCVDEDADTKAKQEKEIAA 926
>11_01_0214 -
1682731-1682744,1683597-1683640,1684284-1684372,
1684461-1684505,1685044-1685073,1685189-1685296,
1685380-1685465,1686180-1686267,1687494-1687694,
1687885-1687960,1688040-1688089,1688180-1688242,
1688322-1688398,1688893-1688953,1689377-1689417,
1690005-1690086
Length = 384
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 280 PILSAVLHIVEIVEGKFSCKLLTKVLITVCKLVCSFSL 393
P LS V++I +++ F CKL +++ V CSF L
Sbjct: 294 PWLSIVVNIASMLKNNFVCKLPVYMVVQVTINTCSFIL 331
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = -3
Query: 506 DSRDMEIKIIRPMKDISEEELKLYINSKNLKVNDKQTSKENEHTSLQTVISTFVSSLQEN 327
D +M + + + + + + E+ + + ++DK E H L +++ S +
Sbjct: 1017 DVLEMVVALSQSFESLYKTEVLDLVEKFDKYLSDKNAGSEM-HEELHDILTAANSLPKAP 1075
Query: 326 FPSTISTIC---KTADKIGLQDECDNERHNMCV 237
+ + +C + D + L D+CD+E H C+
Sbjct: 1076 WEDGVCKVCGIDRDDDSVLLCDKCDSEYHTYCL 1108
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = -3
Query: 506 DSRDMEIKIIRPMKDISEEELKLYINSKN--LKVND---KQTSKENEHTSLQTVISTFVS 342
D D +++R +KD EELK+ ++ +K+ND Q S E + L+ V+ S
Sbjct: 370 DESDSGQRVVRSLKDKRNEELKITVDQMRNAMKINDWVNLQESFEKLNKQLEKVVRVNES 429
Query: 341 SLQEN 327
S N
Sbjct: 430 STVPN 434
>03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,
8554143-8555386,8556901-8556967,8557059-8557150,
8557269-8557480,8558541-8558623,8559092-8559122,
8559770-8559951,8560557-8560616,8561092-8561289,
8561485-8561539,8562740-8562855,8563012-8563176,
8563310-8563483,8564134-8564333,8564778-8564882,
8565063-8565126,8566452-8566718
Length = 1300
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = -3
Query: 356 STFVSSLQENFPSTISTICKTADKIGLQDECDNERHNMCVICQSILKPDEKAISALDATS 177
S+F + L+ N P +IS IC T G+ C E M + + D+ +S+L +
Sbjct: 904 SSFQNQLESNMPGSISQICDTFMSQGI--SCVPESSFMVGGTSASISSDD-LLSSLVSNG 960
Query: 176 ISKIVSLRKHTDSAIDVDMEKNVIN 102
+S + + +T S + ++ V N
Sbjct: 961 LSALRNESTYTASVVALEDTNKVEN 985
>04_04_0962 +
29728983-29729034,29729622-29731369,29731656-29731742,
29732035-29732199,29732437-29732526,29732863-29733027,
29733124-29733418,29733550-29733764,29733879-29733947,
29734107-29734184,29734466-29734529,29734658-29734897,
29734985-29735124
Length = 1135
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 440 LYINSKNLKVNDKQTSKENEHTSLQTVISTFVSSLQE-NFPSTISTICKTA 291
L N +N+ E S Q + F + + + NFP T+S+ICK A
Sbjct: 63 LLAKGANKPLNEDDIPDVGEEESAQHISRIFSNIIVKGNFPLTVSSICKAA 113
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -3
Query: 473 PMKDISEEELKLYINSKNLKVNDKQTSKENEHTSLQTVISTFVSSLQENFPSTISTICKT 294
P + E++ + + LK +DK T + EH + V + + I TIC +
Sbjct: 568 PALEDDPEKMSSMNHEEPLKEDDKSTLEVGEHNTTSPVSEPLLMGSTGSVNPNIDTICSS 627
Query: 293 -ADKIGLQDECDNE 255
D + +C+ +
Sbjct: 628 GTDAVAETPQCEEQ 641
>07_01_0181 +
1274177-1274200,1274335-1276161,1276519-1277448,
1278314-1278367
Length = 944
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = -3
Query: 506 DSRDMEIKIIRPMKDISEEELKLYINSKN--LKVND---KQTSKENEHTSLQTVISTFVS 342
D D +++R +KD EELK+ ++ +K+ND Q S E + L+ V+ S
Sbjct: 54 DESDSGQRVVRSLKDKRNEELKITVDQMRNAMKINDWVNLQESFEKLNKQLEKVVRVNES 113
Query: 341 SLQEN 327
+ N
Sbjct: 114 TTVPN 118
>01_01_0433 + 3282195-3285185
Length = 996
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 227 SILKPDEKAISALDATSISKIVSLRKHTDSAIDVDMEKNVINSTIFPY 84
++ P K +S L + +ISK + +H D I +D+ N +N I P+
Sbjct: 489 AVSSPKVKFLS-LASCNISKFPNALRHQDKIIFLDLSNNQMNGAIPPW 535
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,756
Number of Sequences: 37544
Number of extensions: 257194
Number of successful extensions: 652
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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