Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F02
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    66   5e-12
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    62   8e-11
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    61   2e-10
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.9  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   8.6  

>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 34/53 (64%), Positives = 39/53 (73%)
 Frame = -1

Query: 741 EVISGWDXGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNSTLVFEVELKNV 583
           EVI GWD GV+GM+ GG+RKI  P  MAYG + S P IP NSTLVFEV+L  V
Sbjct: 309 EVIRGWDVGVAGMQEGGERKITIPAPMAYGNQ-SIPGIPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 62.1 bits (144), Expect = 8e-11
 Identities = 30/51 (58%), Positives = 37/51 (72%)
 Frame = -1

Query: 744 KEVISGWDXGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNSTLVFEVEL 592
           +EVI GWD G+ GM+VGG+R I  P  MAYG+K  P  IP NS LVF+V+L
Sbjct: 309 EEVIKGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKL 358


>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 26/50 (52%), Positives = 34/50 (68%)
 Frame = -1

Query: 741 EVISGWDXGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNSTLVFEVEL 592
           ++I GWD GV  M +G K K+   P   YG +G P +IPPNSTL+F+VEL
Sbjct: 55  QLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVEL 104


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -1

Query: 417 SFDGQYYLFVI*RLLRRTVIIT*LVLMLNSH 325
           SFDGQ+ L++  +L+  T+++     ++NSH
Sbjct: 281 SFDGQFSLYIAHQLILETIVVE----VMNSH 307


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 670 RADNLPFASDFH-TRNTXIP 726
           R D++PFASDF  +R T +P
Sbjct: 180 RCDDIPFASDFFCSRETNMP 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,369
Number of Sequences: 5004
Number of extensions: 60123
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)