Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F02
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                       58   1e-08
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     29   5.3  
SB_37230| Best HMM Match : PAZ (HMM E-Value=0.035)                     29   5.3  
SB_42215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 24/53 (45%), Positives = 35/53 (66%)
 Frame = -1

Query: 738 VISGWDXGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNSTLVFEVELKNVK 580
           VI GW+ G+  M +G KRK+  PP +AYG  G+   IPP++TL  +VEL  ++
Sbjct: 81  VIQGWEQGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMDVELVEIQ 133


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
 Frame = -1

Query: 738 VISGWDXGVSGMKVGGKRKIICPPGMAYGAKGSPPVIP----PNSTLVFEVELKNVK 580
           VI G++ GV+GM VG KRKI+ PP +AYG KGS  V       N+TL + +EL +V+
Sbjct: 157 VIKGFEQGVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLELFDVR 213


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/78 (23%), Positives = 36/78 (46%)
 Frame = +2

Query: 509 KHTCFIHTMAIK*SNYLLLKTSVHLTFFNSTSNTKVELGGITGGEPFAPYAMPGGQIIFL 688
           K+T F  +  +  S   L  ++V L+   + S   ++   I    P    ++P    + +
Sbjct: 462 KNTTFTPSEIVSPSISTLHTSTVELSSTGNVSMLTLKTNSIPVTSPAPSTSLPASSTLPV 521

Query: 689 LPPTFIPETPXSQPLMTS 742
           LP + + ETP +Q + +S
Sbjct: 522 LPTSSLAETPSTQSVASS 539


>SB_37230| Best HMM Match : PAZ (HMM E-Value=0.035)
          Length = 167

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 684 KIICPPGMAYGAKGSPPVIPPNSTLVF 604
           +++ PP + YG K S P+ P  +T V+
Sbjct: 91  RVLPPPKLVYGGKQSSPITPKGATDVY 117


>SB_42215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 394 ICHLETSQEDCYNYMIGVNVKFTLRLA---GKLHWT 296
           IC L   QE+C NYM  V V   +++A   GK+H T
Sbjct: 51  ICSLAI-QEECDNYMTDVGVLLRVKIALSVGKMHIT 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,771,212
Number of Sequences: 59808
Number of extensions: 405056
Number of successful extensions: 730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)