Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F01
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    28   1.2  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    28   1.6  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   3.7  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    26   6.4  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    26   6.4  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   8.5  

>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 196 LYSHHFMYYIYKVVIVS-YLYVLQ 128
           L+ HH +YYIY  ++++ Y Y +Q
Sbjct: 377 LFEHHDVYYIYNAIVLNDYAYWIQ 400


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 183 WCEYKKSCTKIMTYTWFEFKKKLYLLTFYCVIL 281
           W EY +S + ++ Y W     +L    F C++L
Sbjct: 239 WAEYFRSFSTLLPYLWPTKDYRLQFQIFICIVL 271


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 662 DTGDWVGETVEEAPWWTGWFGL 727
           D   +V  T E APW   WFG+
Sbjct: 695 DPSKFVDRTPENAPWKPYWFGI 716


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 638 SLQITLQDDTGDWVGETVEEAPWWTGWF 721
           SL +  +D T  W  +  + +P+W  WF
Sbjct: 230 SLLVQQEDGTFVWRTDLYKTSPYWMDWF 257


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 248 FFFKLKPCISHYFGTRLFVLAPFYVLHLQSSNCKLFVCVTAHY-QFRIRFVVP 93
           FF  LK C+S+    R  ++ P     L    C + +C  A + + +I FV P
Sbjct: 102 FFIHLKDCLSNAIAWRNIIIGPLSE-ELTFRCCIVPICEAAGWSRLKIIFVAP 153


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 611 RQRHHFRRWLQFLRNCLRKT 552
           RQ+ H R W+ FL + LR++
Sbjct: 315 RQKLHLRAWVSFLGSALRES 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,203
Number of Sequences: 5004
Number of extensions: 55671
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)