Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F01
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.9  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   6.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   6.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.1  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.1  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   9.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   9.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.1  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +2

Query: 176 HKMVRVQKVLYQNNDLYMXXXXXXIVFINILLCYSFQIF 292
           + M+RV K   Q  D+Y       +  + I+L +   +F
Sbjct: 349 YPMIRVHKTQSQTIDIYSRIGFPILFMLFIILYWPILLF 387


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 75  STFTMTRNYKSNSKLVMSCNTYK 143
           S+ +   NY +N+   + CN YK
Sbjct: 83  SSLSNNYNYNNNNYKKLYCNNYK 105


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 75  STFTMTRNYKSNSKLVMSCNTYK 143
           S+ +   NY +N+   + CN YK
Sbjct: 83  SSLSNNYNYNNNNYKKLYCNNYK 105


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 668 GDWVGETVEEAPWWTGW 718
           GD + E   + PW+ GW
Sbjct: 198 GDNMLEPSPKTPWYKGW 214


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 157 VIVSYLYVLQLITNLEFD 104
           +++SY+Y+L  I  +  D
Sbjct: 94  ILISYIYILMAILRMSAD 111


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 157 VIVSYLYVLQLITNLEFD 104
           +++SY+Y+L  I  +  D
Sbjct: 93  ILISYIYILMAILRMSAD 110


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 668 GDWVGETVEEAPWWTGW 718
           GD + E   + PW+ GW
Sbjct: 125 GDNMLEVSSKMPWFKGW 141


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 668 GDWVGETVEEAPWWTGW 718
           GD + E   + PW+ GW
Sbjct: 141 GDNMLEVSSKMPWFKGW 157


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 668 GDWVGETVEEAPWWTGW 718
           GD + E   + PW+ GW
Sbjct: 198 GDNMLEVSSKMPWFKGW 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,752
Number of Sequences: 438
Number of extensions: 4045
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)