Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_E22
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 85 8e-18
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual 36 0.009
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 30 0.43
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 29 1.0
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar... 27 2.3
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 27 4.0
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 26 5.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 7.1
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 9.4
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 25 9.4
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 9.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.4
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 85.4 bits (202), Expect = 8e-18
Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 8/138 (5%)
Frame = -3
Query: 496 GYARLKDAVPPTDYFKYQDHWRFMTQRYCYLIALTIW---LEKGI-----LASHETMAEI 341
G A L P Y+KY W Q+ YL L W L+K + L S + +I
Sbjct: 83 GLAELASNFP---YYKYNGVWDRSIQKVVYLYLLASWTGRLDKSLRPTYSLLSLSEVGQI 139
Query: 340 LGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGF 161
L V + FHL IE YL +L++CSEL+R +VNSV G+Y P + ++++ F
Sbjct: 140 LQVPVFPEESTFHLSIEQYLHAVLSLCSELARQSVNSVISGNYHIPFEALNTIQKVHSSF 199
Query: 160 RLLNLKNDHLRKRFDATK 107
++L+LKND LR+ FD K
Sbjct: 200 QVLSLKNDSLRRHFDGLK 217
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1
Query: 111 LKYDVKKIEEVVYDL 67
LKYD+K+ E+VVYDL
Sbjct: 216 LKYDLKRSEDVVYDL 230
>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
Length = 231
Score = 35.5 bits (78), Expect = 0.009
Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 1/172 (0%)
Frame = -3
Query: 682 FSDFQKNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNEAGISPACGKARLLFEKA 503
F F+ L ++Q+ RE I + +E+ S+ +L ++ P +FEK
Sbjct: 5 FLSFKNFLQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFDRTSIFEKK 64
Query: 502 -HDGYARLKDAVPPTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEILGVSP 326
H LK + + K+ Q Y + WL+ G L S + + + ++
Sbjct: 65 IHKELESLKRELAGLNADKFSSACTHGLQEYVEAVTFKFWLQTGTLLSCKDSSFRISINF 124
Query: 325 VELKEGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELN 170
+ DY++G+ M E+ R V + ++ ++ + KF+ L+
Sbjct: 125 I-----------DYVLGVCDMTGEIMRFLVTNGSKFSVQQLTQQVKFLRGLH 165
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 29.9 bits (64), Expect = 0.43
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = -3
Query: 478 DAVPPTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILAS-HETMAEILGVSPVELKEGFH 302
DA+ F H F+T Y Y I T+ + KG + TM + L + +
Sbjct: 137 DALLTVSLFGLFHHLMFLTTNYSYTINSTLDISKGFFINVLSTMVQALVTVTIAFTKFVT 196
Query: 301 LDIEDYLIGLLTMCSELSR 245
+D Y+ L + LSR
Sbjct: 197 IDFPIYVFSSLFLYHPLSR 215
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 519 RRALPHAGEMPASL*CITWSTVVASRDIWSTSLHI 623
RR +P E PA C++W+ V + +WS+ HI
Sbjct: 128 RRCIPD--EHPAKRLCLSWAIVGMNAWVWSSVFHI 160
>SPBC25H2.08c |mrs2||magnesium ion transporter
Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -3
Query: 667 KNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNE 554
++LD+ E+ + T CK+VD+I ++ ++ I E
Sbjct: 280 RDLDKHDEVELLLETYCKQVDEIVQQTDNLVGNIRSTE 317
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +3
Query: 147 KFNNLKPAFSSITNLEILRGRS*SPRVTEFTARRDNSEHIVNSPIR*SSMSK-WKPSFNS 323
+F N+ AF ++T +LR S T S +VNS S+S+ S
Sbjct: 323 RFTNVLSAFDALTRTYLLRQNSKVVHATSQKQEMQTSRRVVNSCYMPESLSRNLSSSLQQ 382
Query: 324 TG 329
TG
Sbjct: 383 TG 384
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 26.2 bits (55), Expect = 5.4
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = -3
Query: 724 KHVKMCDNELINKIFSDFQKNLDQEQEL----RETIRTICKEVDQISREATTVLQVIHYN 557
K+ +C NE NK++ K+++ ++++ + I+ IC ++ Q L+
Sbjct: 261 KYKWLCINEKCNKLYGRHSKSINPQKQVCRLCKSQIKQICPKIKQ-PNAFQIFLKENSKR 319
Query: 556 EAGISPACGKARLLFEKAHDGYARLKDA 473
+ P L+ +K D Y R KDA
Sbjct: 320 LRKLHPHITHKELM-KKLSDEYHRTKDA 346
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 660 STKNKNYARLFGLYVKRLTKYLGK 589
STK A +G YV++LTK + K
Sbjct: 699 STKTSKAASAYGAYVEQLTKLMDK 722
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 172 NAGFRLLNLKNDHLRKRFDATKV*RKENRGSGLRSQHXGGCCH 44
NAG L NL ND++ A + +E + RS H C+
Sbjct: 276 NAGHLLQNLSNDNVSVSVKALENGNEEVSNNHARSPHSSRACN 318
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 222 RVTEFTARRDNSEHIVNSPIR*SSMSKWKPSFNSTGLTPNISAMVSCEARIPFSSHI 392
R + T R NSE+ +N+P S + F G T +V E P SS +
Sbjct: 192 RAKDETMRNQNSEYALNNPNLFDFRSGYIFPFQRVGATVPKKRLVETETPPPSSSKL 248
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 144 RTIICANASTPLKYDVKKIEE 82
R +IC AS +KY+++K EE
Sbjct: 104 RKVICTLASLTIKYELEKKEE 124
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 361 HETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSR 245
H T+AEI + KE + D D+ G +C+ L R
Sbjct: 4051 HATLAEIYCFTCSSWKEPCYFDDSDFYFGTKILCNILYR 4089
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,676
Number of Sequences: 5004
Number of extensions: 62742
Number of successful extensions: 184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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