Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_E22
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329... 127 9e-30
01_01_1144 - 9066832-9066935,9067968-9068169,9068265-9068414,906... 34 0.11
01_01_0611 + 4541505-4541646,4543503-4543621,4543728-4543866,454... 29 3.2
08_02_0245 + 14731718-14731951,14733756-14734847 29 5.6
11_06_0051 - 19645726-19646007,19646045-19646513,19647749-196477... 28 7.4
03_05_0071 - 20491521-20492813 28 7.4
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484... 28 7.4
08_02_0707 - 20212190-20214592 28 9.7
>10_08_0176 +
15432092-15432470,15432592-15432688,15432801-15432985,
15433012-15433056,15433447-15433472,15435299-15435434,
15435608-15435702
Length = 320
Score = 127 bits (307), Expect = 9e-30
Identities = 76/213 (35%), Positives = 109/213 (51%), Gaps = 21/213 (9%)
Frame = -3
Query: 682 FSDFQKNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNEAGISPACGKARLLFEKA 503
F F+ LD+ LR+ IR + EV+ SR A+ L ++H ++ GKA+ E
Sbjct: 81 FESFRAQLDESSTLRDRIRAVVSEVESASRVASAALLLVH-QPVPLADVLGKAKAQVEVI 139
Query: 502 HDGYARLKDAVP--PTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEILGVS 329
Y+RL + + P Y++Y WR TQ ++A WLE G L H E LG
Sbjct: 140 KGLYSRLAEILKECPGQYYRYHGDWRSETQAVVSMLAFMHWLETGGLLMHAEAQEKLGCM 199
Query: 328 P------------------VELKEG-FHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYER 206
P +++ G F LD+EDYL GL M ++ R VN VT GDY+
Sbjct: 200 PGPCDGGVVHIDCVLCVMKLKVSSGEFGLDVEDYLTGLCFMSNDFPRYVVNRVTAGDYDC 259
Query: 205 PLRISKFVMELNAGFRLLNLKNDHLRKRFDATK 107
P ++ F+ +L+A FR+LNL+ND LRK+FD K
Sbjct: 260 PRKVLSFLTDLHASFRMLNLRNDFLRKKFDGMK 292
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -1
Query: 111 LKYDVKKIEEVVYDLSXQG 55
+KYD++++EEV YD+ +G
Sbjct: 291 MKYDLRRVEEVYYDVKIRG 309
>01_01_1144 -
9066832-9066935,9067968-9068169,9068265-9068414,
9068553-9068637,9069264-9069343,9069972-9070070
Length = 239
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -3
Query: 313 EGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMEL 173
E +++ DY++G+ + EL RLA+ ++ G+ E I FV ++
Sbjct: 126 EPLQINVLDYVLGVADLSGELMRLAIGRISDGEVEYAKNICAFVRDI 172
>01_01_0611 +
4541505-4541646,4543503-4543621,4543728-4543866,
4543924-4544178,4545094-4545212
Length = 257
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 565 HYNEAGISPACGKARLLFEKAHDGYARLKDAVPPTDY 455
HYN + +P+ G ++ L DGYA L++ PP ++
Sbjct: 208 HYNVSSSAPSAGDSKPL--PGDDGYAWLEECEPPDNF 242
>08_02_0245 + 14731718-14731951,14733756-14734847
Length = 441
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -2
Query: 239 RELCDPRRLRAPPEDLQVRDGTERRLQVIELEERSFAQTLRRH 111
REL + R+ A ++ Q R TE+++ +++ +R+ + LR H
Sbjct: 28 RELVEKSRVEAEGKNGQQRSDTEKKIDLLKFIDRTRQRMLRLH 70
>11_06_0051 -
19645726-19646007,19646045-19646513,19647749-19647771,
19647978-19648328
Length = 374
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 736 RLLIKHVKMCDNELINKIFSDFQKNLDQEQELRETIRTICKEVDQISREATTVL 575
+L + K NE IN+I F + +E+E R I +E+ + TTV+
Sbjct: 196 KLELMEAKRRQNEKINRILEKFNEMEKRERESMHRRRDIMEELSTSIKVTTTVI 249
>03_05_0071 - 20491521-20492813
Length = 430
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 364 SHETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSV 227
SH+ ++ G +P + EGF + D + LL SR+A V
Sbjct: 49 SHQRQMQVFGQAPDRVVEGFSEEFLDAFLTLLRRAHRHSRIAATVV 94
>03_03_0168 -
15047383-15047847,15048085-15048192,15048313-15048464,
15048555-15048752,15049553-15050856,15051281-15051354,
15051458-15051492,15052853-15053015
Length = 832
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Frame = -3
Query: 754 NKIKEPRLLIKHVKMCDNELINKIFSDFQKNLDQEQELR--ETIR-----TICKEVDQIS 596
+++++ RL +K +K +EL+ ++F Q ++E+E + ET+ E+ +S
Sbjct: 103 DELRKRRLPVKGLK---DELVRRLFESIQSEKEEEEEEQDNETVEVNPAANQASEIQSVS 159
Query: 595 REATTVLQVIH 563
+E T + +H
Sbjct: 160 QETTVSITEVH 170
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = -3
Query: 64 HXGGCC-HKGDADHGPEHEH 8
H G CC H GDA+ H+H
Sbjct: 535 HNGACCEHHGDANKSHHHDH 554
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,660,565
Number of Sequences: 37544
Number of extensions: 409398
Number of successful extensions: 1164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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