Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_E21
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    29   0.59 
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   1.8  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   2.4  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.2  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    25   9.6  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -2

Query: 677 KELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEKLTK 522
           K L +   +S ++ LSQ K  ++ +TTS     D +S+  +   D+++ L K
Sbjct: 689 KLLLNEQIESLNDQLSQLKTEMESVTTSKESLADYLSNLKERHNDELDSLNK 740


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 635 LSQTKKSIDDITTSARRSMDDISSKAKS 552
           L   KKS DDITT  +R M+D  S  +S
Sbjct: 177 LCSPKKSKDDITTPKKRLMEDTYSPRES 204


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 758 LTNXISLNAGKGRQAIEWVIGKFDTEIKELASSACKSTDELLSQTK 621
           L N + +++    +  +WV  K D E+KE+ +     TD  L  T+
Sbjct: 641 LVNRLDVDSFLHPKTPKWVFNKQDQEVKEIKALTSTVTDSTLVDTQ 686


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 547 SVLFALDEISSIDLLADVVMSSIDFFVCDNNSSVLLQAELA 669
           +++  L     I LL  +++ S+    CDNN + +LQ  +A
Sbjct: 554 NIIDKLTSNEQISLLLKIIIPSLTTLACDNNGTHVLQKCIA 594


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 665 SSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEK 531
           +SA  S+DE   Q       + +S++  + +  S+ KS L D+EK
Sbjct: 267 TSAKVSSDEYARQVDTLDTKLNSSSKSKVQEEISRLKSELRDLEK 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,058
Number of Sequences: 5004
Number of extensions: 62698
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)