Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_E19
(503 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 86 1e-17
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 86 1e-17
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 86 1e-17
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 83 1e-16
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 83 1e-16
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 83 1e-16
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 72 2e-13
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 69 2e-12
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 31 0.58
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont... 30 1.0
At1g67140.1 68414.m07638 expressed protein 29 2.4
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila... 27 9.5
At4g26540.1 68417.m03823 protein kinase family protein Three fal... 27 9.5
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 86.2 bits (204), Expect = 1e-17
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = -2
Query: 415 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 236
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 235 KLSSMPVGGG 206
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 86.2 bits (204), Expect = 1e-17
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = -2
Query: 415 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 236
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 235 KLSSMPVGGG 206
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 86.2 bits (204), Expect = 1e-17
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = -2
Query: 415 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 236
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 235 KLSSMPVGGG 206
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 83.0 bits (196), Expect = 1e-16
Identities = 35/70 (50%), Positives = 55/70 (78%)
Frame = -2
Query: 415 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 236
M+ AA+LLAVLGG P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 235 KLSSMPVGGG 206
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 83.0 bits (196), Expect = 1e-16
Identities = 35/70 (50%), Positives = 55/70 (78%)
Frame = -2
Query: 415 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 236
M+ AA+LLAVLGG P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 235 KLSSMPVGGG 206
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 82.6 bits (195), Expect = 1e-16
Identities = 37/70 (52%), Positives = 53/70 (75%)
Frame = -2
Query: 415 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 236
M+ VAA+LLAVL GK +P D++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 235 KLSSMPVGGG 206
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 72.1 bits (169), Expect = 2e-13
Identities = 34/70 (48%), Positives = 48/70 (68%)
Frame = -2
Query: 415 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 236
M+ VAAYLLA L G P+ AD++KI+ SVG E D EK+ + + +DV +LIA GRE
Sbjct: 1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60
Query: 235 KLSSMPVGGG 206
K++++ GGG
Sbjct: 61 KMAALSSGGG 70
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 68.9 bits (161), Expect = 2e-12
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = -2
Query: 415 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 236
M+ +AA+LLA LGG P + D++KIL SVG E D K+ + + + DV +LIAAGRE
Sbjct: 1 MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60
Query: 235 KLSSMPVGG 209
K+S++ GG
Sbjct: 61 KMSALSSGG 69
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 30.7 bits (66), Expect = 0.58
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = -2
Query: 346 EKILSSVGIEADGEKLKKVITELNGKDVE----QLIAAGREKLSSMP 218
E++L G+E +K+++TE NG+ +E +L+A+G+ L P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371
>At4g29880.1 68417.m04252 leucine-rich repeat family protein
contains leucine rich repeats, Pfam:PF00560
Length = 404
Score = 29.9 bits (64), Expect = 1.0
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = +2
Query: 197 CRCSASYWH*RQLLTSGRNKLFNILAVELSDYFLKLLTVSFDTDGAEDLLNVSGSWRGLA 376
C+ S H +++ S +L N++A+++ +K L S +LNVSG++
Sbjct: 79 CKLDLSNNHIKKIPESLTARLLNLIALDIHSNQIKALPNSIGCLSKLKILNVSGNFLVSL 138
Query: 377 TQHSQ*IRGHVTHFLSPN 430
Q Q R H + PN
Sbjct: 139 PQTIQNCRFHTSTKSGPN 156
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 230 QLLTSGRNKLFNILAVELSDYFLKLLTVSFDTDGAEDLLNVS 355
Q L++GR L+++L L++L+ SF D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444
>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar to
DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
Length = 1280
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +2
Query: 281 LSDYFLKLLTVSFDTDGAEDLLNVSG---SWRGL 373
L+ YF ++ SF D +L NVSG W+GL
Sbjct: 1006 LTHYFTEITDYSFTADMETELDNVSGGVTEWKGL 1039
>At4g26540.1 68417.m03823 protein kinase family protein Three false
introns were added with non-consensus splice sites to
circumenvent frameshifts likely due to sequencing
errors; this is extremely unusual and is under
investigation.
Length = 1089
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -1
Query: 488 LVDVCSRRTLFFRHYTFRVN*DLKNALRGRVFTGCAGWQ 372
L+ CS R L Y + N L + L G GC W+
Sbjct: 815 LLGWCSNRNLKLLFYDYLPNGSLSSRLHGAGKGGCVDWE 853
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,094,753
Number of Sequences: 28952
Number of extensions: 130952
Number of successful extensions: 416
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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