Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_E18
(746 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 31 0.81
At1g67650.1 68414.m07720 expressed protein 29 2.5
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 29 3.3
At1g05360.1 68414.m00543 expressed protein Similar to Arabidopsi... 29 3.3
At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit, ... 29 4.3
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 29 4.3
At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondr... 29 4.3
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 29 4.3
At1g02570.1 68414.m00208 expressed protein 29 4.3
At5g61580.1 68418.m07727 phosphofructokinase family protein simi... 28 7.6
At3g51410.1 68416.m05631 expressed protein contains Pfam profile... 28 7.6
At1g60460.1 68414.m06807 hypothetical protein 28 7.6
At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containi... 28 7.6
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 27 10.0
At3g09030.1 68416.m01059 potassium channel tetramerisation domai... 27 10.0
At1g74800.1 68414.m08666 galactosyltransferase family protein co... 27 10.0
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote... 27 10.0
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Frame = -1
Query: 443 RFREDTPDIKALRE--KEKGD-WRKLTLEEKKTLY 348
+++E+ PD+K++RE K G+ W+ +T EEK Y
Sbjct: 80 QYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYY 114
>At1g67650.1 68414.m07720 expressed protein
Length = 651
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 164 SGAEP--SASLHSMSQE*DCTQRLSWPCRSKQPKMRGLEPNQRLPSTLRWGPGTQRRSDR 337
SGA+P S S+SQE +++ + K PK LE + P RW P +R S R
Sbjct: 535 SGAKPIEGISAASLSQEEVKKEKVKRKRKPKYPKGFDLENSGPTPDPERWLPRRERSSYR 594
Query: 338 MK 343
K
Sbjct: 595 PK 596
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 512 WVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKA 411
W F G Y+ R +F LP+I E TP+ KA
Sbjct: 346 WKIKSFPGNKEYMLRAEFHLPSITAEEATPERKA 379
>At1g05360.1 68414.m00543 expressed protein Similar to Arabidopsis
hypothetical protein PID:e326839 (gb|Z97337) contains
transmembrane domains
Length = 416
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -1
Query: 443 RFREDTPDIKALREKEKGDWRKLTLEEK--KTLYRASFCQTFAEFQAPTGEWKGVVGWAL 270
R TP I LREK + D KLTL + KTL R F + + VGW +
Sbjct: 6 RASSKTPAISGLREKHQQDLEKLTLTSQPFKTL-RLFVVAVFLYVRRWSSYLLANVGWLI 64
Query: 269 VLSSL 255
+ S+
Sbjct: 65 LFCSI 69
>At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit (Ath-A), Arabidopsis thaliana
Length = 1084
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 622 WPII*CAGRSSMLSVFLSAPGLDPLETLNLPRLVTVS 512
WP M+ VFL + G+ +E LPRLV VS
Sbjct: 490 WPGNSVRDHPGMIQVFLGSDGVRDVENNELPRLVYVS 526
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 179 KAQLQRMLDLKVNPIDGLASKWDYENNRLEV 87
KA L R++D PIDG + D+E R+EV
Sbjct: 373 KAMLGRVVDAMGVPIDGKGALSDHEQRRVEV 403
>At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondrial
(RPOMT) identical to SP|P92969 DNA-directed RNA
polymerase, mitochondrial precursor (EC 2.7.7.6)
{Arabidopsis thaliana}
Length = 976
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 545 NTELAKIGDREWVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEK 393
N ++ + DR W G G VDR D P+P RED K R + K
Sbjct: 468 NKKVLSLVDRIWANGGRIG--GLVDREDVPIPEEPEREDQEKFKNWRWESK 516
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 449 AIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYR 345
A+ + TP IKA++E+ GD K+ LE + LY+
Sbjct: 666 AMAMKSLTPQIKAIQERYAGDQEKIQLETAR-LYK 699
>At1g02570.1 68414.m00208 expressed protein
Length = 431
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 462 VRPVYVVGLAVETIAYPLTVTNLGKFSVSSGSSP 563
VRP ++ +++ ++ PL+ L + SVSS S+P
Sbjct: 17 VRPFQMISISLLSLLVPLSFLFLSRLSVSSSSAP 50
>At5g61580.1 68418.m07727 phosphofructokinase family protein similar
to phosphofructokinase [Amycolatopsis methanolica]
GI:17432243; contains Pfam profile PF00365:
Phosphofructokinase
Length = 530
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 497 FNGQPNYVDRPDFPLPAIRFREDTPDIKALREK 399
FN N + R DFPLPA++ ++ + + L +K
Sbjct: 18 FNPSSNVLPRRDFPLPALKLKKVSVLPRILHQK 50
>At3g51410.1 68416.m05631 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 255
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 31 FLLYTTTQ*VFTRQCSIKFTSXRLFS*SHLEASPSM 138
F+ +TT + T+ CS+KF S RL S H +S M
Sbjct: 161 FMFLSTTSTMKTKTCSLKFVS-RLISGGHRSSSSIM 195
>At1g60460.1 68414.m06807 hypothetical protein
Length = 356
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -1
Query: 224 FVYSPIPDSLSEERQKAQLQR--MLDLKVNPIDG-LASKWDYENNRLEVNLILHWRVNTY 54
F+ SP+P +K ++ ++ VN DG + +WD + +++ + LHW N Y
Sbjct: 159 FLPSPVPHLALSALKKIDWKKYGLILANVNDQDGHVFLEWDNFPSYVQIQIALHWYHNQY 218
>At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat;
similar to ESTs gb|R30192 and gb|AA651017
Length = 913
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 449 QAGGSQACLRSWAGR*NHSLPTHGHQSWQVQCFQWIQPWRRQEHG 583
QA G Q +SW+ + S P+ QSW Q QPW Q G
Sbjct: 701 QAPGYQQ-QQSWSQQSGWSSPSGHQQSWTNQTAGQQQPWANQTPG 744
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 27.5 bits (58), Expect = 10.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 458 GSQACLRSWAGR*NHSLPTHGHQSWQVQCFQW 553
GSQ C +W+ N + THG+ Q+ +++
Sbjct: 384 GSQVCNLAWSKNVNEIVSTHGYSQNQIMLWKY 415
>At3g09030.1 68416.m01059 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 460
Score = 27.5 bits (58), Expect = 10.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 590 NAIRVPVCARAGSTGNTELAKIGDREWV 507
++I VC+++G G ++ K+G+ WV
Sbjct: 330 DSILFKVCSKSGDLGMADIRKLGEDPWV 357
>At1g74800.1 68414.m08666 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 672
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 434 EDTPDIKALREKEKGDWRKLTLEEKKTLYR 345
ED P I + KGDW K + E+ + YR
Sbjct: 241 EDPPRILHFNPRLKGDWSKKPVIEQNSCYR 270
>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GI:4105699
from [Arabidopsis thaliana]
Length = 996
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 655 SYNSSPILPAKWPII*CAGR-SSMLSVFLSAPGL 557
S+NS+ P +W + CAG SS+ SV LS+ L
Sbjct: 39 SWNSNDASPCRWSGVSCAGDFSSVTSVDLSSANL 72
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,509,126
Number of Sequences: 28952
Number of extensions: 401754
Number of successful extensions: 1010
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -