Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_E13
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    61   1e-10
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    49   4e-07
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    35   0.006
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    33   0.017
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    32   0.039
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    27   1.1  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    27   1.1  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   3.4  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   4.5  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   4.5  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    25   5.9  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   7.8  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   7.8  

>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = -3

Query: 472 NLKRVAKELGENLTDEELHEMIDEADRDGDGEINQEEFLRIM 347
           NL+RVAKEL EN+ D+EL  MI+E D D DGEIN++EF+ IM
Sbjct: 131 NLRRVAKELNENIDDQELEAMIEEFDLDQDGEINEQEFIAIM 172



 Score = 30.3 bits (65), Expect = 0.16
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 469 LKRVAKELGENLTDEELHEMIDEADRDGDGEINQEEFLRIM 347
           L+   + LG N    E+ +++ + D+ G G +  E+F+R+M
Sbjct: 59  LRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRVM 99


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 23/41 (56%), Positives = 28/41 (68%)
 Frame = -3

Query: 469 LKRVAKELGENLTDEELHEMIDEADRDGDGEINQEEFLRIM 347
           L  V   LGE L+ EE+ +MI EAD DGDG IN EEF R++
Sbjct: 107 LTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVI 147



 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 18/40 (45%), Positives = 27/40 (67%)
 Frame = -3

Query: 460 VAKELGENLTDEELHEMIDEADRDGDGEINQEEFLRIMKK 341
           V + LG++ T  EL +MI+E D DG+G I+  EFL +M +
Sbjct: 37  VMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMAR 76



 Score = 28.7 bits (61), Expect = 0.48
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 469 LKRVAKELGENLTDEELHEMIDEADRDGDGEINQEEFLRIM 347
           L  +A+++ +   +EE+ E     D+DG+G I  EE   ++
Sbjct: 71  LTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVL 111



 Score = 25.8 bits (54), Expect = 3.4
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -3

Query: 439 NLTDE---ELHEMIDEADRDGDGEINQEEFLRIMK 344
           NLTDE   E  E     DRD DG I   E   +M+
Sbjct: 5   NLTDEQIAEFREAFSLFDRDQDGNITSNELGVVMR 39


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 17/41 (41%), Positives = 28/41 (68%)
 Frame = -3

Query: 472 NLKRVAKELGENLTDEELHEMIDEADRDGDGEINQEEFLRI 350
           +L+R   +LGENLT E+L  M+D A    +G++++EEF  +
Sbjct: 33  DLRRSCAQLGENLTKEQLQLMLDLAGT--NGKVSREEFAEL 71


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 33.5 bits (73), Expect = 0.017
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 454 KELGENLTDEELHEMIDEADRDGDGEINQEEFL-RIMKK 341
           K LGE L+D E+  M+ EAD    G  +  +F+ RIM K
Sbjct: 105 KTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIMAK 143


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 32.3 bits (70), Expect = 0.039
 Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
 Frame = -3

Query: 448 LGENLTDEELHEMID----EADRDGDGEINQEEFLRIMKKTSL 332
           +G NL +++L +++D    E D+D DG+I+ EEF  I+  +++
Sbjct: 123 VGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEFKDIVSGSNV 165


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -3

Query: 469 LKRVAKELGENLTDEELHEMIDEADRDGDGEINQEEFLRIM 347
           L+ V   LGE L++EE+ E++       DG +N  +F++++
Sbjct: 99  LRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMI 138


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 460 VAKELGENLTDEELHEMIDEADRDGDGEINQEE 362
           V  +  E   +EE  EM +E D +G+G+  +EE
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEE 202


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -3

Query: 469  LKRVAKELGENLTDEELHEMIDEADRDGDGEINQEEFLRIMKKTSL 332
            ++ +AK L       +L  M++E D D   ++  +EF  + K+ S+
Sbjct: 969  IENIAKYLASVRERRDLAPMLEEPDMDDLDDMEGDEFAPVAKRKSV 1014


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 421 LHEMIDEADRDGDGEINQEEFLRIMKKT 338
           L ++  + DRD DG +N EE   + + T
Sbjct: 309 LVDLFYQFDRDNDGALNNEELSALFRHT 336


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 57  IGMYLICLQ*KLMRC-NFRIRNTLGLFF 137
           +G + +  + KL+ C  F I NTLGLF+
Sbjct: 20  LGFFFVIFE-KLLSCLAFMIHNTLGLFY 46


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 427 EELHEMIDEADRDGDGEINQEE 362
           +EL E     D+DGDG I +E+
Sbjct: 48  QELKEAFALLDKDGDGNIGRED 69


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 445  GENLTDEELHEMIDE 401
            G NLTD+EL E+I E
Sbjct: 1019 GSNLTDDELIELISE 1033


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 341 LFHDTQEFLLIYFTIPISISFIYHFMQF 424
           +F+D Q+F++ + +  I+ +F Y F  F
Sbjct: 460 VFNDIQDFIVCFESETIAFAFKYKFFAF 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,229
Number of Sequences: 5004
Number of extensions: 30279
Number of successful extensions: 88
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)