Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_E12
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    30   0.24 
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    26   0.87 
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   6.8  

>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 425 RGRYSDSLILTFVFCPSLCCPFRCASWD 508
           RGR    LI+TFV+   + CP  C  W+
Sbjct: 162 RGRIGPMLIITFVWLTVVYCPIACWIWN 189


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect(2) = 0.87
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 515 MCYLVLLRXELDYNXIWTPQISISIWD 595
           +CY+     E D+N IW  Q S++ WD
Sbjct: 329 LCYVQCPSIE-DFNKIWKNQASMNEWD 354



 Score = 20.6 bits (41), Expect(2) = 0.87
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 443 SLILTFVFCPSL 478
           SLIL +V CPS+
Sbjct: 326 SLILCYVQCPSI 337


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -2

Query: 543 SXRSRTK*HMPMSQDAQRNGQHKLGQNTKVNIRESLYRPRAPGSQRAGRRSAK 385
           S R R K   PM++  + N    LGQ  K N + +  R   P S R G   AK
Sbjct: 302 SKRMRNK--SPMARSGRFNDAESLGQEDKPNFKRA--RKIDPRSVRPGAALAK 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,907
Number of Sequences: 5004
Number of extensions: 40927
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)