Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_E12
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26490| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_15718| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7)                     30   1.8  

>SB_26490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +2

Query: 443 SLILTFVFCPSLCCPFRCASWDIGMCYLVLLRXELDYNXIWTPQISISIWDLDADLL 613
           SL++ F+F P  CC F+   W       VL+  +L Y  +W      ++W+ DA LL
Sbjct: 298 SLLVVFMFNPFRCCYFKARFW----LLKVLVSMDL-YKLLW----DYALWETDAPLL 345


>SB_15718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
 Frame = +2

Query: 398 LPAR*LPGARGRYSDSLILTFVF---C-----------PSLCCPFRCASWDIGMCYLVLL 535
           LP R   GA+  Y  +L+L F F   C           PSLC PFR A+ D+    L +L
Sbjct: 565 LPDRPYQGAKSTYIFTLLLLFTFFMTCGLVGWGVTRVPPSLCGPFRNANCDLSTSILSIL 624

Query: 536 RXELDYNXIWTPQ 574
             E+     W  Q
Sbjct: 625 SAEVSKWPEWLHQ 637


>SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7)
          Length = 353

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 516 MPMSQDAQRNGQHKLGQNT-KVNIRES-LYRPRAPGSQRAGRRSAK 385
           +P  Q  QRN  +KL  N  +V   E    RP+ PG   AGRR AK
Sbjct: 164 LPERQTGQRNRTNKLLMNLHRVTSPEPPATRPKHPGRVEAGRRLAK 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,059,231
Number of Sequences: 59808
Number of extensions: 296129
Number of successful extensions: 732
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)