Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_E12
         (628 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X71806-1|CAA50680.1|  257|Drosophila melanogaster lethal of scut...    30   2.9  
X12549-1|CAA31065.1|  257|Drosophila melanogaster protein ( Dros...    30   2.9  
AY121693-1|AAM52020.1|  257|Drosophila melanogaster RE59335p pro...    30   2.9  
AL024453-2|CAA19656.1|  257|Drosophila melanogaster EG:198A6.2,F...    30   2.9  
AE014298-29|AAF45500.1|  257|Drosophila melanogaster CG3839-PA p...    30   2.9  

>X71806-1|CAA50680.1|  257|Drosophila melanogaster lethal of scute
           protein.
          Length = 257

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -2

Query: 504 QDAQRNGQHKLGQNTKVNIRESLYRPRAPGSQRAGRRSAKRTSQAN*LRASVKYV 340
           ++A+   + K   N  VN+R+ L +         GR S+K+ S+ + LR +V+Y+
Sbjct: 88  RNARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYI 142


>X12549-1|CAA31065.1|  257|Drosophila melanogaster protein (
           Drosophila T3 gene ofachaete-scute complex (AS-C). ).
          Length = 257

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -2

Query: 504 QDAQRNGQHKLGQNTKVNIRESLYRPRAPGSQRAGRRSAKRTSQAN*LRASVKYV 340
           ++A+   + K   N  VN+R+ L +         GR S+K+ S+ + LR +V+Y+
Sbjct: 88  RNARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYI 142


>AY121693-1|AAM52020.1|  257|Drosophila melanogaster RE59335p
           protein.
          Length = 257

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -2

Query: 504 QDAQRNGQHKLGQNTKVNIRESLYRPRAPGSQRAGRRSAKRTSQAN*LRASVKYV 340
           ++A+   + K   N  VN+R+ L +         GR S+K+ S+ + LR +V+Y+
Sbjct: 88  RNARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYI 142


>AL024453-2|CAA19656.1|  257|Drosophila melanogaster
           EG:198A6.2,FBgn0002561;l(1)sc protein.
          Length = 257

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -2

Query: 504 QDAQRNGQHKLGQNTKVNIRESLYRPRAPGSQRAGRRSAKRTSQAN*LRASVKYV 340
           ++A+   + K   N  VN+R+ L +         GR S+K+ S+ + LR +V+Y+
Sbjct: 88  RNARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYI 142


>AE014298-29|AAF45500.1|  257|Drosophila melanogaster CG3839-PA
           protein.
          Length = 257

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -2

Query: 504 QDAQRNGQHKLGQNTKVNIRESLYRPRAPGSQRAGRRSAKRTSQAN*LRASVKYV 340
           ++A+   + K   N  VN+R+ L +         GR S+K+ S+ + LR +V+Y+
Sbjct: 88  RNARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYI 142


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,045,143
Number of Sequences: 53049
Number of extensions: 422109
Number of successful extensions: 866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2600432100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)