Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_E09
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        153   2e-37
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        34   0.16 
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.5  
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   4.4  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         29   4.4  
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)                      29   5.9  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  29   5.9  
SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)            28   7.7  
SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  153 bits (370), Expect = 2e-37
 Identities = 69/100 (69%), Positives = 85/100 (85%)
 Frame = -3

Query: 804 DXNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 625
           + NP LEKLLPHIKGN+GFVFT+ DL +VR  ++ENKV APA+ G IAP+ V +PA NTG
Sbjct: 52  ENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTG 111

Query: 624 LGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 505
           LGPEKTSFFQAL+IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 112 LGPEKTSFFQALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +1

Query: 541 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 663
           I+D  NS   +  R  K+LEERGLL+  +GV GG +  ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -3

Query: 702  ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 529
            E ++ +PA     +P S+        TGL P   S  Q LS+ T +   ++    D+   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 528  KPGDK 514
             PG K
Sbjct: 2129 TPGKK 2133


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 635 WAGMTTDNGAMAPGRAGAWTLFSNSL 712
           W+  T D     PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
 Frame = +2

Query: 359  PAWNLARRSSGLMSRISGAKIVPESY-TCLTTRPYENGEMFNMLRRVASEAPTLSP---G 526
            P+ N    S  L     GA   P  + T  T+ PY +          AS +PT+SP    
Sbjct: 1193 PSTNNDPVSQPLFITTPGALFTPLPHETSATSPPYTSASPVPTTTPSASSSPTISPIGSS 1252

Query: 527  FKMCTSLMISIVPFEILVGIERAWKKEVFS------GPRPVLWAGMTTDNGAMAP 673
               C+++     P    +G ERA ++   S      G  P++  G    NG   P
Sbjct: 1253 LAQCSTVDSMDKPSLRPIGTERACRRATASPLPSMPGISPLIGGGKLVGNGDSVP 1307


>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
          Length = 939

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 404 ISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL--MISIVPFEIL 577
           +S + +VP+SY    TRP  NG+   +  + A E P+L+  F+    L  +I  +   I 
Sbjct: 162 LSVSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFEDDRHLQGVIQSIRDAIS 218

Query: 578 VGIERAWK 601
              + AWK
Sbjct: 219 NAFDMAWK 226


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 509  PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 625
            P   P F+ C +L+ ++  ++ +    RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878


>SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 265 QKVLETIGNGMRG*SNSWVSNSQRKSSYISNSSLELGTEIFWFDVQNFR 411
           Q + +++  G+     SW+SN      +  + S++ G E F+ D+ + R
Sbjct: 545 QFIADSLPGGLSSRVLSWISNKVNVRKFFQHISVQFGREYFYSDLPSRR 593


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = -3

Query: 615  EKTSFFQALSIP---TKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSY-GLV 448
            E  S  Q+ + P   T++S G+   +  V  +KP  + G  + T ++  N+S  S     
Sbjct: 2269 EPVSIMQSQNTPPVETELSAGSRTSLPKVSAIKPSVEYGQLDDTEIHETNLSASSIPSEK 2328

Query: 447  VKQVYDSGTIFAPEILDI 394
            VK ++ S T+  P  L I
Sbjct: 2329 VKSLFMSSTLDTPSSLSI 2346


>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
          Length = 320

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -3

Query: 513 VGASEATLLNMLNISPFSYGLVVKQVYD---SGTIFAP-EILDIKPEDLRAKFQAGVANV 346
           +  S +  + +L +SP  YG+    +     +G +F    IL + PE + +   A VA  
Sbjct: 82  IAGSSSVYIGLLGLSPAQYGITFAAIVSALIAGALFTQRRILQLGPEKIVSIGAALVATG 141

Query: 345 AALSLAI 325
           A  +LAI
Sbjct: 142 ALTTLAI 148


>SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -2

Query: 376 CQVPSWXXXXXXSFFGYWIPNYCFSPAFHCQWFQEPFGH 260
           C  P           GYW+ NYC     +CQ     FGH
Sbjct: 318 CNTPDSYIGIGAKQSGYWVGNYCMQ---YCQVKLAAFGH 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,623,701
Number of Sequences: 59808
Number of extensions: 485428
Number of successful extensions: 1197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)