Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_E09
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   280   7e-76
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   6.8  
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   9.0  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  280 bits (687), Expect = 7e-76
 Identities = 140/245 (57%), Positives = 170/245 (69%)
 Frame = -3

Query: 798 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 619
           NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAP  V +P  NTG+G
Sbjct: 72  NPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMG 131

Query: 618 PEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQ 439
           PEKTSFFQAL IPTKI++GTIEI+NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+Q
Sbjct: 132 PEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQ 191

Query: 438 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXX 259
           VYD GT++ PE+LD+  E+LR +F +GV NVA++SLA+ YPT+AS  HS+ANG +N+L  
Sbjct: 192 VYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGV 251

Query: 258 XXXXXXXXXXXXXIKEFIKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMG 79
                        IK FI DPSKF                              SDDDMG
Sbjct: 252 AAVTDVSFKEAETIKAFIADPSKF----AAAAPAAAAAPAAAAPAAKKEEPKEESDDDMG 307

Query: 78  FGLFD 64
           FGLFD
Sbjct: 308 FGLFD 312


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
 Frame = -3

Query: 789 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP-AHNTGLGPE 613
           L K    +KG  G +FT     EV  +  E   +  AR G +A  +VV+P    +     
Sbjct: 90  LHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFS 149

Query: 612 KTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVK 442
                + L +PTK+ KG I +     + K G+ +   +A +L    +    + L+ K
Sbjct: 150 MEPQLRKLGLPTKLDKGVITLYQQFEVCKEGEPLTVEQAKILKHFEVKMSQFRLIFK 206


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 647 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 757
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 708 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 559
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,145,511
Number of Sequences: 27780
Number of extensions: 346543
Number of successful extensions: 984
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)