Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_E09
(806 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 233 8e-62
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 231 4e-61
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 230 9e-61
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 36 0.032
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 29 4.8
At1g58220.1 68414.m06612 myb family transcription factor contain... 28 6.3
At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containi... 28 8.4
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 8.4
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 8.4
At3g50610.1 68416.m05534 hypothetical protein 28 8.4
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 28 8.4
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 233 bits (571), Expect = 8e-62
Identities = 111/204 (54%), Positives = 146/204 (71%)
Frame = -3
Query: 798 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 619
N A LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL
Sbjct: 75 NQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 134
Query: 618 PEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQ 439
P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+
Sbjct: 135 PSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVES 194
Query: 438 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXX 259
VYD+G++F PE+L++ +DL KF AGV+ + ALSLAI YPT+A+APH N +KN+L
Sbjct: 195 VYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAV 254
Query: 258 XXXXXXXXXXXXXIKEFIKDPSKF 187
+KEF+KDP+KF
Sbjct: 255 ALATEYSFPQAENVKEFLKDPTKF 278
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 231 bits (565), Expect = 4e-61
Identities = 108/204 (52%), Positives = 146/204 (71%)
Frame = -3
Query: 798 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 619
N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL
Sbjct: 74 NTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 133
Query: 618 PEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQ 439
P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+
Sbjct: 134 PSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQS 193
Query: 438 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXX 259
VYD+G++F+PE+LD+ + L KF +G++ V +L+LA+ YPT+A+APH N +KN L
Sbjct: 194 VYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAI 253
Query: 258 XXXXXXXXXXXXXIKEFIKDPSKF 187
+KEF+KDPSKF
Sbjct: 254 AVATDYTFPQAEKVKEFLKDPSKF 277
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 230 bits (562), Expect = 9e-61
Identities = 107/204 (52%), Positives = 146/204 (71%)
Frame = -3
Query: 798 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 619
N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL
Sbjct: 74 NTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 133
Query: 618 PEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQ 439
P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+
Sbjct: 134 PSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQS 193
Query: 438 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXX 259
VYD+G++F+PE+LD+ + L KF +G++ V +L+LA+ YPT+A+APH N +KN L
Sbjct: 194 VYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAI 253
Query: 258 XXXXXXXXXXXXXIKEFIKDPSKF 187
+KE++KDPSKF
Sbjct: 254 AVATEYTFPQAEKVKEYLKDPSKF 277
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 35.9 bits (79), Expect = 0.032
Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Frame = -3
Query: 768 IKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG-LGPEKTSFFQA 592
++G+ G + T EV + +R G+IA +V + E +
Sbjct: 97 LRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRK 156
Query: 591 LSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYGLVVKQVYDSGTI 418
L +P +++KGT+E++ D + + G ++ A +L +L ++ F L+ + +
Sbjct: 157 LEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFEL 216
Query: 417 FAPEILDIKPEDL 379
+ ++ ++ EDL
Sbjct: 217 YREDLSELYREDL 229
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 368 NLARRSSGLMSRI-SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTS 544
N+ R + S I +G+ PE+Y+ + PYE E + R +++ P +P +
Sbjct: 357 NIGREFAFAESAIPNGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAE 413
Query: 545 LMISIVPFEILVGIE 589
L+ + EI G E
Sbjct: 414 LVAATERMEINEGDE 428
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 28.3 bits (60), Expect = 6.3
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Frame = +2
Query: 488 RRVASEAPTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAM 667
RR + + G + + M + + VG R K++ G P+L +G T GA
Sbjct: 244 RRTDTSNTSTQTGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQ 300
Query: 668 APGRAGAWTLFSN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGL 799
A G + TL +LSR +T P ++ + GNS SRA L
Sbjct: 301 ANGASSGSTLQGQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADL 352
>At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 632
Score = 27.9 bits (59), Expect = 8.4
Identities = 27/98 (27%), Positives = 42/98 (42%)
Frame = -3
Query: 561 TIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPED 382
TIEI N VH + GD+ + + ML + +++ G + P + +D
Sbjct: 502 TIEIENKVHEFRAGDREHSKSKEIYTMLR-------KISERIKSHG--YVPNTNTVL-QD 551
Query: 381 LRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 268
L + V + LAI Y I++ P S FKNL
Sbjct: 552 LEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNL 589
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +2
Query: 650 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 763
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 791 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 687
P R HT+R SC ETS +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 771 HIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEK 610
H KGNV + D KLL+ VQ + G+ + P H+ G+G +K
Sbjct: 45 HKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPGHSPGVGHKK 99
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +1
Query: 634 VGGNDD*QWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 780
+G + + +G+ T + +LQ + +S+GE E +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,562,010
Number of Sequences: 28952
Number of extensions: 334986
Number of successful extensions: 938
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -