Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_E08
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0382 - 22501041-22501279,22501717-22501810 32 0.19
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 28 2.4
12_01_0442 + 3495333-3496484 27 4.1
03_06_0471 + 34169562-34169892,34170121-34170347 27 4.1
09_03_0203 + 13475118-13475447,13475529-13475660,13475924-134761... 27 5.5
09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,708... 27 5.5
01_01_0506 + 3701448-3701591,3702097-3702400,3702894-3703012,370... 27 5.5
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 5.5
11_04_0154 + 14172294-14172459,14172993-14173054,14174781-141748... 27 7.2
11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475 27 7.2
09_04_0652 - 19227686-19227926,19229368-19232294 27 7.2
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 27 7.2
01_06_0832 + 32291454-32291537,32291584-32291661,32292081-322928... 26 9.5
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 31.9 bits (69), Expect = 0.19
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = -3
Query: 325 KFFMIFVLALLAMANAQVLISNRNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGA 158
K ++F L L A A ++ +G P ++ + PP D P+ + Y+P +
Sbjct: 11 KALLVFALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPD 70
Query: 157 YYVDRPQGRPYFKPTPXPW 101
YY D P Y+ P P P+
Sbjct: 71 YY-DPPPSPDYYDPPPSPY 88
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = +2
Query: 110 RGRLEVRSALGTVHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAV---SVRDENLS 280
R R+E + HV+ + + + + N R ++ + + DEN
Sbjct: 365 RERIEAKKEKCPAHVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTVLPWGNYSDENFD 424
Query: 281 VGHSQQSEDENH 316
V H+QQ DE+H
Sbjct: 425 VHHAQQILDEDH 436
>12_01_0442 + 3495333-3496484
Length = 383
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 310 FVLALLAMANAQVLISNRNGYEPIDNRP 227
+VLAL AMA+ VLI++ + P+ RP
Sbjct: 21 YVLALPAMASLAVLIAHLDAAVPVPRRP 48
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -3
Query: 250 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPXP 104
Y P P PP Y P+ GY P GAY +P + P P
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYP 101
>09_03_0203 +
13475118-13475447,13475529-13475660,13475924-13476119,
13476281-13476385,13476726-13476803,13477269-13477346,
13477655-13477983
Length = 415
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = -2
Query: 338 SYKNEILHDFRPRSAGYGQRSS----SHLEPKRLR 246
S++ E++ FRP +A YG SS S L P LR
Sbjct: 308 SFRPELMSGFRPYTASYGDISSFGGGSSLVPNELR 342
>09_02_0302 -
7086017-7086124,7086125-7086796,7087511-7088070,
7088754-7089131,7089357-7089821,7090022-7090127,
7090219-7090294,7090407-7090648,7090824-7090904,
7091013-7091205,7091336-7091558,7091611-7091646,
7091694-7091790
Length = 1078
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 298 LLAMANAQVLISNRNGYEPIDN 233
L+ N + I NRNGY P+D+
Sbjct: 782 LMGCKNVSLSIRNRNGYTPLDH 803
>01_01_0506 +
3701448-3701591,3702097-3702400,3702894-3703012,
3703118-3703723
Length = 390
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 282 TLKFSSRTETATNLLTTARTSLILPKTTTL 193
T++ R+ETAT + T + S LP TTL
Sbjct: 350 TMERKRRSETATAMATATQASQALPVKTTL 379
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -3
Query: 250 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTP 110
Y P + P V PP Y P +G P N + Y + P GRP P P
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPP 442
>11_04_0154 +
14172294-14172459,14172993-14173054,14174781-14174859,
14174964-14175164,14175420-14175610
Length = 232
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1
Query: 19 HMKF*NILLIHYFVINFLRYSLLPTASTRXKG*A*SKVGLGDGPRNMHR 165
H K +L++ VIN L S TA KG A + G G G M R
Sbjct: 164 HRKKIKVLILFLQVINVLYISSSLTAERETKGLAGHQEGAGHGTYGMKR 212
>11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475
Length = 634
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 161 CILRGPSPRPTLLQAYPFXLVLAVGSK 81
C+L P RPT+ + Y L+ A+G K
Sbjct: 581 CVLSAPKERPTMFEVY--QLMRAIGEK 605
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = -3
Query: 292 AMANAQVLISNRNGYEPID----NRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPY 125
A++ QVL S +G PID ++P I+ P K++ N + + + P
Sbjct: 523 ALSKEQVLGSEHSGENPIDDATSSQPVILLPYKEFGSTANEMDGTTENSQKPEDAVAPPA 582
Query: 124 FKPTP 110
P P
Sbjct: 583 VSPLP 587
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Frame = -3
Query: 259 RNGYEPIDN-RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKP 116
R Y P +PY P P P G Y P G Y P+G+P + P
Sbjct: 256 RETYPPQPQVQPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
>01_06_0832 +
32291454-32291537,32291584-32291661,32292081-32292804,
32294259-32294446,32294623-32294682,32295516-32295959
Length = 525
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 217 NPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYF 122
+P +D NG G Y RPQ RPYF
Sbjct: 25 HPAEDLLVVVNGKRAGTTGMYATTRPQTRPYF 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,561,895
Number of Sequences: 37544
Number of extensions: 231255
Number of successful extensions: 617
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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