Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_E08
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   3.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   6.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   9.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    20   9.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 161  CILRGPSPRPTLLQA-YPFXLVLAVGSKEYL 72
            C+LR  +P P +L+A +    VL V ++ +L
Sbjct: 1106 CVLRASTPAPVVLEAVHASRRVLIVLTRNFL 1136


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -1

Query: 240 LTTARTSLILPKTTTLMETATNLSTTVHITWTVPKAD 130
           +TT  T+     TTT   T  N +     T   P+ D
Sbjct: 658 ITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVD 694



 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 214 PPKDYNPNGNGYEPIDNGAYYVDRPQGRP 128
           PP+D+ P    Y  +D    + D+P   P
Sbjct: 417 PPEDWKPLDKCYFCLDGKLPHDDQPPLSP 445


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -3

Query: 271 LISNRNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTP 110
           +IS+ +     +N  Y  N   +YN N N Y       Y ++  +  P   P P
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPVP 134


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 199 NPNGNGYEPIDNGAYYVDRP 140
           N  GN  +  D+GA   DRP
Sbjct: 254 NAAGNNEDSSDSGAAASDRP 273


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 339 SRVITGENIKVVLI 380
           S  ITG N+K VL+
Sbjct: 109 SSAITGNNVKDVLV 122


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -3

Query: 205 DYNPNGNGYEPIDNGAYYVDR 143
           +YN   N Y+P+     Y+++
Sbjct: 323 NYNNYNNNYKPLHYNINYIEQ 343


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -1

Query: 210 PKTTTLMETATNLSTTVHITWTVPKADLT 124
           P+    +ETA   S ++++ W     D T
Sbjct: 908 PQPPNSLETAMVASRSINVKWQHKSQDTT 936


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -1

Query: 210 PKTTTLMETATNLSTTVHITWTVPKADLT 124
           P+    +ETA   S ++++ W     D T
Sbjct: 904 PQPPNSLETAMVASRSINVKWQHKSQDTT 932


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,353
Number of Sequences: 438
Number of extensions: 2899
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)