Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_E08
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07310.1 68414.m00778 C2 domain-containing protein contains s... 29 1.1
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 28 2.0
At1g72110.1 68414.m08335 expressed protein 28 2.0
At5g51490.1 68418.m06386 pectinesterase family protein contains ... 28 2.6
At2g17033.2 68415.m01965 pentatricopeptide (PPR) repeat-containi... 28 2.6
At2g17033.1 68415.m01964 pentatricopeptide (PPR) repeat-containi... 28 2.6
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 27 4.6
At1g12810.1 68414.m01488 proline-rich family protein contains pr... 27 4.6
At3g50370.1 68416.m05508 expressed protein 27 6.1
At2g37780.1 68415.m04639 DC1 domain-containing protein contains ... 27 6.1
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product... 27 6.1
At4g34440.1 68417.m04894 protein kinase family protein contains ... 26 8.0
At3g26470.1 68416.m03300 expressed protein 26 8.0
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati... 26 8.0
>At1g07310.1 68414.m00778 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 352
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 214 PPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPXP 104
PP + P +P+D Y PQG Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173
>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 265 SNRNGYEPIDNRPYIV-NPPKDYNPNGNGYEPIDNGAYYVDRPQ 137
+N N + P N PY +PP P NGY N Y V PQ
Sbjct: 12 NNNNHHHPHHNPPYYYSDPPPQQPPPQNGYSYSHN--YPVSTPQ 53
>At1g72110.1 68414.m08335 expressed protein
Length = 479
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 15 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 110
N+ I++ I NTL + FS I T H EH+GK
Sbjct: 41 NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73
>At5g51490.1 68418.m06386 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 536
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 319 FMIFVLALLAMANAQVLISNRNGYEPIDNRPYIVNPPKDYNPNGNGYE 176
F+ +L +L + +++RN + D PY +P K Y N NG++
Sbjct: 12 FLHLILLVLLCVHPLTTVADRNSTDWCDKTPY-PDPCKCYFKNHNGFQ 58
>At2g17033.2 68415.m01965 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 505
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +2
Query: 116 RLEVRSALGTVHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAVSVRDENLSVGHSQ 295
++ VRS G V ++ DRF++ + G + + + +FVA S + L+V
Sbjct: 77 KMVVRSKAGAVPLM-KHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHL 135
Query: 296 QSEDENHEEFHFYMITSY 349
S+ +H F+ ++ Y
Sbjct: 136 LSDQTSHPHLSFFALSLY 153
>At2g17033.1 68415.m01964 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 504
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +2
Query: 116 RLEVRSALGTVHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAVSVRDENLSVGHSQ 295
++ VRS G V ++ DRF++ + G + + + +FVA S + L+V
Sbjct: 76 KMVVRSKAGAVPLM-KHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHL 134
Query: 296 QSEDENHEEFHFYMITSY 349
S+ +H F+ ++ Y
Sbjct: 135 LSDQTSHPHLSFFALSLY 152
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -3
Query: 229 PYIVN--PPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPXP 104
PY+ N PP Y+P+ Y P PY+ PTP P
Sbjct: 612 PYVYNSPPPPYYSPSPKPTYKSPPPPYVYSSPPP-PYYSPTPKP 654
>At1g12810.1 68414.m01488 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 129
Score = 27.1 bits (57), Expect = 4.6
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = -3
Query: 265 SNRNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPXP 104
S+ GY P +PY PP P GY+ G Y + G P P P P
Sbjct: 39 SHHEGYPP--PQPYGGYPPPSSRPYEGGYQGYFAGGGYPHQHHGPP---PPPPP 87
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -3
Query: 229 PYIVNPPKDY-NPNGNGYEPIDNGAYYVDRPQGRP 128
PY P K Y NP G+ Y P Y V +P+ P
Sbjct: 761 PYSPYPEKLYQNPEGDDYYPFGRPRYSVRQPRVLP 795
>At2g37780.1 68415.m04639 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 286
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 211 PKDYNPNGNGYEPIDNGAYYVDRPQGRP 128
P+ Y P G GY+P N YY G P
Sbjct: 154 PEPYPPQGGGYQP-QNQNYYPYMNSGSP 180
>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
[Arabidopsis thaliana] GI:871782
Length = 748
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 320 LHDFRPRSAGYGQRSSSHLE 261
+H+ RP++A YG RS H E
Sbjct: 386 IHESRPKTAVYGGRSPDHRE 405
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -3
Query: 220 VNPPKDYNPNGNGYEPIDNGAYYVDRPQ 137
VN YN N G P NG YY PQ
Sbjct: 222 VNHMHYYNNNPYGGAPSGNGGYYKGTPQ 249
>At3g26470.1 68416.m03300 expressed protein
Length = 221
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 298 LLAMANAQVLISNRNGYEPIDNRPYIVNPPKDYNP 194
+LAM AQ ++ NG++P P + P NP
Sbjct: 185 MLAMKRAQDVLLRANGFDPETLLPMMSPPAASMNP 219
>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
identical to peroxiredoxin (Rehydrin homolog)
[Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
and thiol-specific antioxidant) family
Length = 216
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 235 NRPYIVNPPKDYNPNGNGYEPIDNG 161
N P I +P K+ P N +PI+NG
Sbjct: 95 NYPIIADPNKEIIPQLNMIDPIENG 119
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,437,243
Number of Sequences: 28952
Number of extensions: 184248
Number of successful extensions: 496
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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