Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_E05
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    31   0.18 
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   2.9  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   3.8  

>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 72  VATTIVLCTYLNNVYITFVSEIRKSFCTERYY 167
           + TT+    Y+ ++  +++S+IR+ +CT  +Y
Sbjct: 104 IGTTVGFAAYMLDIVTSWLSDIRRGYCTSHWY 135


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 636 KNSHENNPPSAFFCSKSNEPV*NMHYHEYI 725
           +++H NNPP A     SNE V + H  EY+
Sbjct: 151 RSNHLNNPPEAPITEASNEYVYSFHL-EYV 179


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 95  YLLKQCIHNVCIGNTKIIL 151
           YLLKQC+ N+ + N+ I L
Sbjct: 652 YLLKQCLSNISLSNSVISL 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,034
Number of Sequences: 5004
Number of extensions: 66841
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)