Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_E05
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical
           protein C06B3.10 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 63  ILHVATTIVLCTYLNNVYITFVSEIRKSFCTERYY 167
           ++H+ +TI +C    N+ I F+S+I    CT   Y
Sbjct: 259 LMHIPSTISMCAAFTNISIEFISQILS--CTISLY 291


>Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 607 RCEKTSKLN*RIVM-KIIHHLLFFAPNQTSRYEICIIMNT 723
           + E   ++  RI+  KIIH L  F P    R E+C I+ T
Sbjct: 250 QAEPVQRVQRRIIATKIIHKLALFLPPNEIRKELCPIVTT 289


>Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 607 RCEKTSKLN*RIVM-KIIHHLLFFAPNQTSRYEICIIMNT 723
           + E   ++  RI+  KIIH L  F P    R E+C I+ T
Sbjct: 250 QAEPVQRVQRRIIATKIIHKLALFLPPNEIRKELCPIVTT 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,898,787
Number of Sequences: 27780
Number of extensions: 365416
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)