Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_E04
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar...    27   2.5  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    26   5.8  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    25   7.6  

>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +1

Query: 397 ANRVNGAHIFNIADTVRICVRSIFFFGW*TEFHHPIIRCIVGSTLAPTAAVRPGAVQDCL 576
           A++V+ +H F     ++ C+ S  +    T FH      ++  T  P  +  P  V+DC+
Sbjct: 2   ASKVDSSHEF--PSQIKRCLSSSKYIQLATCFHDQPHSSLMTFTYLPAGSAAPYEVEDCI 59

Query: 577 V 579
           +
Sbjct: 60  I 60


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 519 DNAAYDWMMKFGLPTEEEYGSYTNADGIC-NIKNMSTIYPIRGWTDVTPLNVEALKVAAV 343
           D     +M+   L  E EY +   +DG+C +    ST Y +     +    + A+ ++A+
Sbjct: 373 DRGPNPFMISLDLYVENEYITTLQSDGVCVSTPTGSTAYSVAAGGSLCHPGIPAILISAI 432


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 435 CNIKNMSTIYPIRGWTDVT 379
           C +K++   Y I GW D T
Sbjct: 402 CKVKHLERTYEISGWNDST 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,728
Number of Sequences: 5004
Number of extensions: 56001
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)