Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_E04
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.22 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 384 RQSNRESGKWCSYF*YCRYRPHLCKIHILLRLVNRISSSNHTLHCRIHPR 533
           R S+ E G +CS       RP L    ++ R+ N++ ++  T+  + HP+
Sbjct: 331 RLSDAELGLFCSVVVIAADRPGLRNTELVERMHNKLRNALQTVLAQNHPQ 380


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 352 YLQSLNVKWRDVSPTANRVNGAHIFNIAD 438
           YL  +N   RD++     VN A +  IAD
Sbjct: 750 YLAEMNYVHRDLAARNVLVNAALVCKIAD 778


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 474 RLVNRISSSNHTLHCRIHPRT 536
           RLV        TLHC +H  T
Sbjct: 815 RLVTVKKGDTATLHCEVHGDT 835


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 474 RLVNRISSSNHTLHCRIHPRT 536
           RLV        TLHC +H  T
Sbjct: 811 RLVTVKKGDTATLHCEVHGDT 831


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,983
Number of Sequences: 438
Number of extensions: 4075
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)