Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_E02
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006730-2|AAK72091.1|  322|Caenorhabditis elegans Serpentine re...    34   0.13 
AF016421-8|AAO12431.1|  230|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF016421-7|AAO12430.1|  413|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine re...    29   3.6  

>AC006730-2|AAK72091.1|  322|Caenorhabditis elegans Serpentine
           receptor, class i protein34 protein.
          Length = 322

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -3

Query: 666 VLVDVIV*MKPLHRICFNQTLFCTHVKCTQYVLNLTILNMP 544
           VLV +I+  K    + F   L    + CT YVL LTIL+ P
Sbjct: 27  VLVILIIIFKSYKIVEFQYMLLAFQISCTNYVLQLTILSQP 67


>AF016421-8|AAO12431.1|  230|Caenorhabditis elegans Hypothetical
           protein F44E7.5b protein.
          Length = 230

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 361 LTRIQDFINAHYKIVMNIRMPKDTCSVIKKC 453
           L  +  F+  HY+  ++I +PKD C   +KC
Sbjct: 32  LRELVQFVIGHYEAHLHITLPKDECCDEEKC 62


>AF016421-7|AAO12430.1|  413|Caenorhabditis elegans Hypothetical
           protein F44E7.5a protein.
          Length = 413

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 361 LTRIQDFINAHYKIVMNIRMPKDTCSVIKKC 453
           L  +  F+  HY+  ++I +PKD C   +KC
Sbjct: 32  LRELVQFVIGHYEAHLHITLPKDECCDEEKC 62


>AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein33 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 681 YKLNCVLVDVIV*MKPLHRICFNQTLFCTHVKCTQYVLNLTILNMP 544
           + LN +++ +I+  K      F   L    + CT YVL LTIL+ P
Sbjct: 23  FVLNFLVIFLII-FKSYKVDSFQYYLLGFQISCTNYVLQLTILSQP 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,526,791
Number of Sequences: 27780
Number of extensions: 308512
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)