Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D23
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    55   1e-08
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    44   2e-05
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    42   8e-05
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    29   0.57 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.3  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    27   2.3  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   5.3  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 28/75 (37%), Positives = 43/75 (57%)
 Frame = -1

Query: 629 AKXDKDQGAYEDFLECLKLYDKNXNGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPE 450
           A+  KD    E+  E  K++DK+ NG +   ELTH L +LGE+L   EVA++ ++     
Sbjct: 75  ARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREA--DT 132

Query: 449 DDDGMIPYAAFLKKV 405
           D DG+I Y  F + +
Sbjct: 133 DGDGVINYEEFSRVI 147



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = -1

Query: 596 DFLECLKLYDKNXNGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAF 417
           +F E   L+D++ +G +   EL   + +LG+    +E+ ++  +     D +G I +  F
Sbjct: 13  EFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEV--DADGNGTIDFTEF 70

Query: 416 L 414
           L
Sbjct: 71  L 71


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 23/70 (32%), Positives = 42/70 (60%)
 Frame = -1

Query: 608 GAYEDFLECLKLYDKNXNGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIP 429
           G  E+F++  +++DK+  G++   EL + L +LGEKL + E+ E+ K        DGM+ 
Sbjct: 74  GDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGV---PVKDGMVN 130

Query: 428 YAAFLKKVMA 399
           Y  F++ ++A
Sbjct: 131 YHDFVQMILA 140


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 20/67 (29%), Positives = 41/67 (61%)
 Frame = -1

Query: 599 EDFLECLKLYDKNXNGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAA 420
           E++++  +++DK+ +G +  A+    +  LGEKL D+EV  + ++  DP  + G   Y  
Sbjct: 78  EEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEA-DP-TNSGSFDYYD 135

Query: 419 FLKKVMA 399
           F++++MA
Sbjct: 136 FVQRIMA 142



 Score = 29.9 bits (64), Expect = 0.32
 Identities = 14/60 (23%), Positives = 33/60 (55%)
 Frame = -1

Query: 599 EDFLECLKLYDKNXNGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAA 420
           ++  E   LYD + +GL+  + +   L +LG  + D+E+A+++ +  D  D+   + + +
Sbjct: 9   DEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKFMSFVS 68


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -1

Query: 638 YSQAKXDKDQGAYEDFLECLKLYDKNXNGLMLGAELTHTLLALGEKLDDSEVAEVTKD 465
           Y+  + +  +   +D  E  KL+D + +  +   EL   + ALG   + SEV ++ +D
Sbjct: 24  YAPLRVEITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRD 81


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 250  APPEELSPPRALPAPVPQSRASVF*GPSHRT 342
            APP    PP A P P+P S A     P  R+
Sbjct: 1720 APPMPAGPPSAPPPPLPASSAPSVPNPGDRS 1750


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -2

Query: 97  CKTHVVRVFKLLFIYLLSTFIMTKI 23
           CK+H  R+ K LFI  LSTF  T I
Sbjct: 410 CKSHFERIKKTLFIDGLSTFSDTLI 434


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 512 LGEKLDDSEVAEVTKDCMDPED 447
           L EK+ D +   +  DC+DP+D
Sbjct: 777 LAEKVKDFQTMVILLDCLDPKD 798


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,113
Number of Sequences: 5004
Number of extensions: 39767
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)