Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D19
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar...    27   2.7  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    26   6.2  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   6.2  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    25   8.2  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   8.2  

>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +3

Query: 399 ANRVNGAHIFNIADTVRICVRSIFFFGW*TEFHHPIIRCIVGSTLAPTAAVRPGAVQDCL 578
           A++V+ +H F     ++ C+ S  +    T FH      ++  T  P  +  P  V+DC+
Sbjct: 2   ASKVDSSHEF--PSQIKRCLSSSKYIQLATCFHDQPHSSLMTFTYLPAGSAAPYEVEDCI 59

Query: 579 V 581
           +
Sbjct: 60  I 60


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 521 DNAAYDWMMKFGLPTEEEYGSYTNADGIC-NIKNMSTIYPIRGWTDVTPLNVEALKVAAV 345
           D     +M+   L  E EY +   +DG+C +    ST Y +     +    + A+ ++A+
Sbjct: 373 DRGPNPFMISLDLYVENEYITTLQSDGVCVSTPTGSTAYSVAAGGSLCHPGIPAILISAI 432


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 584 IDSTVFLR*FEQGLLQQLQWYRMSSRIHNLLDF 682
           I +  F+R    G L    WYR + +IH   DF
Sbjct: 358 IKNPTFIRCANGGTLLTSGWYRYARKIHYTADF 390


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 437 CNIKNMSTIYPIRGWTDVT 381
           C +K++   Y I GW D T
Sbjct: 402 CKVKHLERTYEISGWNDST 420


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 719 YDLRILGYVSKVKNQEDCGSCWTFGTTAAAEGALARING 603
           Y+LR+L ++       + G C       AAEG  AR NG
Sbjct: 34  YNLRLLDFLEYYPGLSEIGCCNELNCAFAAEG-YARSNG 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,868
Number of Sequences: 5004
Number of extensions: 58983
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)