Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D15
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.67 
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    28   1.2  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   8.2  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   8.2  

>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 374 YCYSFLYRWIMKIGDVYQMEISVSDVEN 457
           + ++ L  WI K GDV++ ++   D+EN
Sbjct: 457 FSHNLLNEWIKKQGDVFESKLLKEDIEN 484


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 446 DVENRSPIKIKILTKIGQEAFRIPCEHT 529
           D+EN+  I  KI  ++ Q+A    C HT
Sbjct: 702 DIENQENIVCKICDEVAQDAIESRCHHT 729


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 127 FTFSELGLVICYTSSRK*ITHNRTFFVILNNFTSHKN 237
           FTF     +I Y ++     +N  F  + NNF+ +KN
Sbjct: 20  FTFQNQRCLIPYGTTTTIRWYNANFQAVQNNFSDYKN 56


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 127 FTFSELGLVICYTSSRK*ITHNRTFFVILNNFTSHKN 237
           FTF     +I Y ++     +N  F  + NNF+ +KN
Sbjct: 20  FTFQNQRCLIPYGTTTTIRWYNANFQAVQNNFSDYKN 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,246
Number of Sequences: 5004
Number of extensions: 50834
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)