Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D15
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          32   0.54 
SB_50993| Best HMM Match : EGF (HMM E-Value=3.4e-19)                   31   1.2  
SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
 Frame = +2

Query: 368  YLYCYSFLYRWIMK--IGDVYQMEISVSDV 451
            YLYC +F+Y+ +++  IG  YQ +IS+ DV
Sbjct: 2187 YLYCLAFVYQIVIEAVIGKNYQGDISIDDV 2216


>SB_50993| Best HMM Match : EGF (HMM E-Value=3.4e-19)
          Length = 220

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 508 ECFLAYFC*YLNFNR*SIFDVAYTDFHLVHITDFHDPS 395
           +CFL   C   N+N  + F  A T     HI DFH+ S
Sbjct: 22  KCFLIDMCQSYNYNETTRFCQASTSTRFQHIIDFHNKS 59


>SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 23/82 (28%), Positives = 37/82 (45%)
 Frame = +1

Query: 58  SWHGTSPHTISYHTQIQVY*NQTFTFSELGLVICYTSSRK*ITHNRTFFVILNNFTSHKN 237
           S H T+ H   ++T      + T   + L     + ++R    HN T    L N T H +
Sbjct: 94  SLHNTTRHNCLHNTTRHNSLHNTTRHNSL-----HNTTRHNSLHNTTRHNSLPNTTRHNS 148

Query: 238 LH*SRKHRSCQ*CSQTSRHSDI 303
           LH + +H S    + TSRH+ +
Sbjct: 149 LHNTTRHNS---LTNTSRHNSL 167


>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = -2

Query: 600  QTILCILINSDPXFKSLTPRSVLTVCSHGILNASWPIFVNILILIGDLFSTSLTLISIWY 421
            Q +L I++N+    K+  P S+    S G+ + S P+F  +++++      S+ L  +W+
Sbjct: 1139 QQVLHIILNNTRELKAF-PSSLAVEQSTGLFDGSSPLFRLLVLILCCTLGCSVLLGLLWH 1197

Query: 420  TSPI 409
               +
Sbjct: 1198 AKHV 1201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,048,593
Number of Sequences: 59808
Number of extensions: 346830
Number of successful extensions: 624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)