Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_D14
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ... 93 6e-20
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.28
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 0.65
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 28 1.5
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 28 1.5
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 28 2.0
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom... 27 3.5
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc... 27 3.5
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.6
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 6.1
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 6.1
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 26 8.0
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 8.0
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 8.0
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 26 8.0
>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 92.7 bits (220), Expect = 6e-20
Identities = 45/74 (60%), Positives = 55/74 (74%)
Frame = -2
Query: 764 NLLDKVNEMIIGGGMAYTFLKETKGMPIGXSLYDAEGAKIVTKLLEXAEKNNVKVHLPVD 585
NLLDKVN +II GGMA+TFLK GM IG SL+D G+K V ++ A+KNNV+V LPVD
Sbjct: 223 NLLDKVNRLIICGGMAFTFLKVLNGMKIGDSLFDEAGSKNVESMMAKAKKNNVEVFLPVD 282
Query: 584 FVTADXXDENASGG 543
FVTAD D++A G
Sbjct: 283 FVTADKFDKDAKVG 296
Score = 79.0 bits (186), Expect = 8e-16
Identities = 54/138 (39%), Positives = 66/138 (47%)
Frame = -3
Query: 868 KKELQYFAXALHEPERPFLAILGGAKVADXILLIETCLIK*MK**LEGVWHTHS*RKPKE 689
KKEL YF+ AL P RPFLAILGGAKVAD I LI+ L K + + G +
Sbjct: 188 KKELDYFSKALENPARPFLAILGGAKVADKIQLIDNLLDKVNRLIICGGMAFTFLKVLNG 247
Query: 688 CRLVIPCMTLRELKL*PNYWXKLRKTMLKFTCPXXXXXXXXXMKMHLVGEANVETGIPDG 509
++ K + K +K ++ P K VG A E GIPDG
Sbjct: 248 MKIGDSLFDEAGSKNVESMMAKAKKNNVEVFLPVDFVTADKFDKDAKVGSATAEEGIPDG 307
Query: 508 WMGLXVGPKSRELFADPI 455
WMGL GPKS FA+ I
Sbjct: 308 WMGLDCGPKSSAKFAEVI 325
Score = 75.8 bits (178), Expect = 8e-15
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = -1
Query: 522 EFLMDGWDSXLDRNHESSSQI--LLPETKVIVWXGPAGVFEXEKFAGGTRAIXDGVVKAT 349
E + DGW LD +SS++ ++ +K IVW GPAGVFE + FA GT+++ D VK
Sbjct: 302 EGIPDGW-MGLDCGPKSSAKFAEVITTSKTIVWNGPAGVFEFDNFAKGTKSMLDACVKTC 360
Query: 348 SNGTVTIIGGGDTATCCAKWG 286
G V I+GGGDTAT K+G
Sbjct: 361 EAGNVVIVGGGDTATVAKKYG 381
Score = 55.2 bits (127), Expect = 1e-08
Identities = 28/37 (75%), Positives = 29/37 (78%)
Frame = -2
Query: 302 VAPSGEPEDKVSHVSTGGGASLELLEGKVLPGVPALS 192
VA ED +SHVSTGGGASLELLEGK LPGV ALS
Sbjct: 376 VAKKYGKEDALSHVSTGGGASLELLEGKALPGVVALS 412
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.28
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 226 SSNSRXAPPPVETCETLSSGSPLGATRCSITTT 324
+S++ PPP T T +S SPL +T S TT+
Sbjct: 310 TSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTS 342
Score = 30.3 bits (65), Expect = 0.37
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 226 SSNSRXAPPPVETCETLSSGSPLGATRCSITTTNDC--DGSIGCSLYDTIXDGSGST 390
+S++ PPP T T +S SPL +T S TT+ G+ + T+ S ST
Sbjct: 364 TSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSST 420
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 205 TPGSTFPSSNSRXAP-PPVETCETLSSGSPLGATRCSITTTNDCDGSIGCSLYDT 366
TP S++S P PP T T ++ +PL T S TT+ + G S T
Sbjct: 135 TPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLST 189
Score = 27.1 bits (57), Expect = 3.5
Identities = 46/192 (23%), Positives = 72/192 (37%), Gaps = 10/192 (5%)
Frame = +1
Query: 205 TPGSTFPSSNSRXAP-PPVETCETLSSGSPLGATRCSITTTNDC----DGSIGCSLYDTI 369
TP S++S P PP T T ++ SPL T S TT+ S+ + T+
Sbjct: 192 TPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTV 251
Query: 370 XDGSGSTCEFLXLKHASRSXPHNNFSLWQ*DLRRALVISVQXRVPSIHQEFRFLH*LLPP 549
S S+ + + S S N S + + +P + +PP
Sbjct: 252 PPTSTSSTS-IPIPPTSTSSTDTNSSPLP---TTSTSCTTSTSIPPTGNSTTPVTPTVPP 307
Query: 550 DAFSSXXS----AVTKSTGR*TLTLFFSAXSNSLVTILAPSA-SYREXPIGIPLVSFKNV 714
+ SS + A T STG + L ++ S + T + P+ S +P S +
Sbjct: 308 TSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSST 367
Query: 715 YAIPPPIIISFT 750
PPP S T
Sbjct: 368 STPPPPASTSST 379
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 29.5 bits (63), Expect = 0.65
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 250 VEXLWSYSKEKCFPVFPLFQMHKSIKHGSSNIYLGFKQNTL 128
V+ WS + V P+ + K HGS+NIY G + TL
Sbjct: 818 VDVEWSTLQRDFTDVDPVRSLMKKTMHGSTNIYFGAVKATL 858
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 323 PMIVTVPLDVAFTTPSXMARVPPANFSNSNTPAGPXHTITLVSGNRICEELS 478
P + V DVAF + PP++ N N P + ITLV G+ I L+
Sbjct: 866 PFALKVVSDVAF-------QYPPSDLVNGNEPLNSFNEITLVEGSSIDRALN 910
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -2
Query: 662 AEGAKIVTKLLEXAEKNNVKVHLPVDFVTAD 570
A+ K++T LL ++ ++++ +PVDF D
Sbjct: 328 AQTCKLITLLLRSSKSEDLRLSIPVDFTVKD 358
>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 396
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -2
Query: 713 TFLKETKGMPIGXSLYDAEGAKIVTKLLEXAEKNNVKVHLPVDFVTADXXDE 558
++++E + + L D E ++ L E E+NN K+HL F DE
Sbjct: 67 SYIEEEEDPDLEAYLSDLEREELEHSLEELDEENNYKLHLRYSFSQLQDFDE 118
>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
Trr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 378 AIXDGVVKATSNGTVTIIGGGDTATCCAKWGTR 280
A+ DG V N + ++GGGD+A A++ T+
Sbjct: 143 AVCDGAVPIYRNKPLAVVGGGDSAAEEAQFLTK 175
>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 642 HNFSSLSVIQGXTNRHSFGFLQECVCHTPSNY 737
HNF + +V T+ ++ F++ C TP Y
Sbjct: 288 HNFHNFTVTDDSTSPSNYRFIESVTCGTPFVY 319
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/65 (29%), Positives = 23/65 (35%)
Frame = +3
Query: 642 HNFSSLSVIQGXTNRHSFGFLQECVCHTPSNYHFIYFIKQVSISKIXSATLAPPRIARKG 821
H+F S TN LQE V F+ K V+ S + S I G
Sbjct: 358 HSFVSAENANEPTNDVDDNSLQEQVADASQFVSFLETTKTVATSNLRSTKRKLSEILENG 417
Query: 822 LSGSC 836
SG C
Sbjct: 418 QSGDC 422
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 187 ASERAGTPGSTFPSSNSRXAPPPVETCETLSSGSPLGATRCSITTTN 327
A TP +T P+SNS + ++T +L SP+ ++ + T+T+
Sbjct: 533 AKSSLSTPSTTIPTSNSSVS---LQTSSSLIISSPIISSSLTATSTS 576
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 483 FGPTSSPIHPSGIPVSTLASP 545
FG S P+ P+G+ +L+SP
Sbjct: 61 FGTVSHPVTPAGVSTDSLSSP 81
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 241 LWSYSKEKCFPVFPLFQMHKSIKHGSSNIYLG 146
++SY KE FPV P+ + + GS LG
Sbjct: 6 MFSYGKENAFPVTPISNRNGTKGAGSKRAPLG 37
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 25.8 bits (54), Expect = 8.0
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +2
Query: 185 MHLKEREHREALFLRVTPEXLHRQ*RRARPCPLVPHLAQHVAVSPPP----MIVTVPLDV 352
+ + E ++ EAL +R E + P P L + PP +PL +
Sbjct: 89 LEIGEIDYNEALQIRSADENQQSVPTVSIASPSTPELPPSSSPLLPPNGSESSSPIPLSL 148
Query: 353 AFTTPSXMARVPPANFSNSNTP 418
T+ ++ P+N SN++ P
Sbjct: 149 LSTSSLQQRKITPSNLSNTSKP 170
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 314 SPPPMIVTVPLDVAFTTPSXMARVPPANFSNSNTPAGP 427
SPP ++ T+P T + PP + NSN A P
Sbjct: 448 SPPVLLPTLPPIQTTTIQTSREVAPPPSSINSNRAASP 485
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 549 WWEKLM*KPEFLMDGWDSXLDRNHESSSQILLP 451
+W + KP W +HESSS I LP
Sbjct: 393 FWRSVQLKPMMQYVNWLEAFYESHESSSSIHLP 425
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,628,509
Number of Sequences: 5004
Number of extensions: 75379
Number of successful extensions: 232
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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