Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_D14
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1062 - 27293119-27293313,27293390-27293548,27293877-272941... 65 6e-11
02_01_0516 + 3727742-3727936,3729115-3729192,3729292-3729552,372... 58 9e-09
01_06_1020 + 33878391-33878582,33879194-33879271,33879363-338795... 56 5e-08
05_05_0343 - 24234026-24234235,24234254-24234502,24234642-242349... 52 5e-07
10_08_0167 - 15370890-15371093,15371588-15371686,15371912-153719... 31 1.2
03_03_0274 - 16089322-16089365,16089604-16089616,16090367-160907... 31 1.2
09_03_0089 + 12265916-12267232 31 1.6
01_01_0083 + 631196-631675 30 2.8
02_05_0506 + 29613307-29613601,29613641-29613678,29613679-296138... 29 3.7
06_01_0475 + 3375757-3375800,3375898-3376168,3376252-3376440,337... 29 4.8
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 29 6.4
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 29 6.4
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 29 6.4
09_06_0081 + 20745627-20748144,20748211-20748308 28 8.5
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 28 8.5
>06_03_1062 -
27293119-27293313,27293390-27293548,27293877-27294194,
27294535-27294795,27294901-27294978,27295707-27295901
Length = 401
Score = 65.3 bits (152), Expect = 6e-11
Identities = 35/77 (45%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = -1
Query: 510 DGWDSXLDRNHESSSQI--LLPETKVIVWXGPAGVFEXEKFAGGTRAIXDGVVKATSNGT 337
DGW LD +S L TK ++W GP GVFE EKFA GT AI + T+ G
Sbjct: 293 DGW-MGLDIGPDSIKTFSETLDTTKTVIWNGPMGVFEFEKFAAGTDAIAKKLADITAKGV 351
Query: 336 VTIIGGGDTATCCAKWG 286
TIIGGGD+ K G
Sbjct: 352 TTIIGGGDSVAAVEKAG 368
Score = 57.2 bits (132), Expect = 2e-08
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = -2
Query: 278 DKVSHVSTGGGASLELLEGKVLPGVPALSDA 186
DK+SH+STGGGASLELLEGK LPGV AL+DA
Sbjct: 371 DKMSHISTGGGASLELLEGKTLPGVLALNDA 401
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/65 (43%), Positives = 41/65 (63%)
Frame = -2
Query: 764 NLLDKVNEMIIGGGMAYTFLKETKGMPIGXSLYDAEGAKIVTKLLEXAEKNNVKVHLPVD 585
+LL KV+ +I+GGGM YTF K +G +G SL + + ++ T L+E A+ V + LP D
Sbjct: 212 SLLAKVDILILGGGMIYTFYK-AQGYAVGKSLVEEDKLELATSLIEKAKSKGVSLLLPTD 270
Query: 584 FVTAD 570
V AD
Sbjct: 271 IVVAD 275
Score = 49.2 bits (112), Expect = 4e-06
Identities = 40/148 (27%), Positives = 69/148 (46%)
Frame = -3
Query: 868 KKELQYFAXALHEPERPFLAILGGAKVADXILLIETCLIK*MK**LEGVWHTHS*RKPKE 689
+KEL Y A+ P++PF AI+GG+KV+ I +IE+ L K + + G ++ K +
Sbjct: 177 QKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAK-VDILILGGGMIYTFYKAQG 235
Query: 688 CRLVIPCMTLRELKL*PNYWXKLRKTMLKFTCPXXXXXXXXXMKMHLVGEANVETGIPDG 509
+ + +L+L + K + + P + + IPDG
Sbjct: 236 YAVGKSLVEEDKLELATSLIEKAKSKGVSLLLP-TDIVVADKFAADAESKTVPASAIPDG 294
Query: 508 WMGLXVGPKSRELFADPIARD*SYCVXW 425
WMGL +GP S + F++ + D + V W
Sbjct: 295 WMGLDIGPDSIKTFSETL--DTTKTVIW 320
>02_01_0516 +
3727742-3727936,3729115-3729192,3729292-3729552,
3729921-3730238,3730527-3730685,3730768-3730961,
3731644-3731647
Length = 402
Score = 58.0 bits (134), Expect = 9e-09
Identities = 34/78 (43%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = -1
Query: 510 DGWDSXLDRNHES--SSQILLPETKVIVWXGPAGVFEXEKFAGGTRAIXDGVVK-ATSNG 340
DGW LD ++ +S L I+W GP GVFE EKFA GT AI + T+ G
Sbjct: 293 DGW-MGLDVGPDAIKTSSEALDTCNTIIWNGPMGVFEFEKFAAGTDAIAKKLADLTTTKG 351
Query: 339 TVTIIGGGDTATCCAKWG 286
TIIGGGD+ K G
Sbjct: 352 ATTIIGGGDSVAAVEKAG 369
Score = 55.2 bits (127), Expect = 6e-08
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = -2
Query: 278 DKVSHVSTGGGASLELLEGKVLPGVPALSDA 186
DK+SH+STGGGASLELLEGK LPGV AL +A
Sbjct: 372 DKMSHISTGGGASLELLEGKTLPGVLALDEA 402
Score = 54.8 bits (126), Expect = 9e-08
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = -2
Query: 764 NLLDKVNEMIIGGGMAYTFLKETKGMPIGXSLYDAEGAKIVTKLLEXAEKNNVKVHLPVD 585
+LL KV+ +I+GGGM +TF K +G +G SL + + ++ T L+E A+ V + LP D
Sbjct: 212 SLLAKVDVLILGGGMIFTFYK-AQGYAVGKSLVEEDKLELATSLIEKAKAKGVSLLLPTD 270
Query: 584 FVTAD 570
V AD
Sbjct: 271 VVVAD 275
Score = 44.4 bits (100), Expect = 1e-04
Identities = 36/128 (28%), Positives = 58/128 (45%)
Frame = -3
Query: 868 KKELQYFAXALHEPERPFLAILGGAKVADXILLIETCLIK*MK**LEGVWHTHS*RKPKE 689
+KEL Y A+ P++PF AI+GG+KV+ I +IE+ L K + + G + K +
Sbjct: 177 QKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAK-VDVLILGGGMIFTFYKAQG 235
Query: 688 CRLVIPCMTLRELKL*PNYWXKLRKTMLKFTCPXXXXXXXXXMKMHLVGEANVETGIPDG 509
+ + +L+L + K + + P + + IPDG
Sbjct: 236 YAVGKSLVEEDKLELATSLIEKAKAKGVSLLLP-TDVVVADKFAADAESKTVAASAIPDG 294
Query: 508 WMGLXVGP 485
WMGL VGP
Sbjct: 295 WMGLDVGP 302
>01_06_1020 +
33878391-33878582,33879194-33879271,33879363-33879524,
33879789-33880106,33880477-33880671
Length = 314
Score = 55.6 bits (128), Expect = 5e-08
Identities = 25/65 (38%), Positives = 42/65 (64%)
Frame = -2
Query: 764 NLLDKVNEMIIGGGMAYTFLKETKGMPIGXSLYDAEGAKIVTKLLEXAEKNNVKVHLPVD 585
+LL+K + +++GGGM +TF K +G P+G SL + + ++ T LL A++ V + LP D
Sbjct: 178 SLLEKCDILLLGGGMIFTFYK-AQGFPVGASLVEDDKLELATSLLAKAKEKGVSLMLPTD 236
Query: 584 FVTAD 570
+ AD
Sbjct: 237 VIVAD 241
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -2
Query: 272 VSHVSTGGGASLELLEGKVLPGVPALSDA 186
+SH+STGGGASLELLEGK LPGV AL +A
Sbjct: 286 MSHISTGGGASLELLEGKELPGVVALDEA 314
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = -3
Query: 862 ELQYFAXALHEPERPFLAILGGAKVADXILLIETCLIK 749
EL Y A+ P+RPF AI+GG+KV+ I +IE+ L K
Sbjct: 145 ELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEK 182
>05_05_0343 -
24234026-24234235,24234254-24234502,24234642-24234959,
24235111-24235371,24235457-24235534,24235834-24236262
Length = 514
Score = 52.4 bits (120), Expect = 5e-07
Identities = 25/72 (34%), Positives = 45/72 (62%)
Frame = -2
Query: 764 NLLDKVNEMIIGGGMAYTFLKETKGMPIGXSLYDAEGAKIVTKLLEXAEKNNVKVHLPVD 585
+LL+K + +++GGGM +TF K +G+ +G SL + + ++ T LL A++ V + LP D
Sbjct: 290 SLLEKCDILLLGGGMIFTFYK-AQGLSVGSSLVEEDKLELATSLLAKAKEKGVSLLLPSD 348
Query: 584 FVTADXXDENAS 549
+ AD +A+
Sbjct: 349 VIIADKFAPDAN 360
Score = 51.6 bits (118), Expect = 8e-07
Identities = 24/31 (77%), Positives = 27/31 (87%)
Frame = -2
Query: 278 DKVSHVSTGGGASLELLEGKVLPGVPALSDA 186
D +SH+STGGGASLELLEGK LPGV AL +A
Sbjct: 479 DVMSHISTGGGASLELLEGKELPGVIALDEA 509
Score = 48.0 bits (109), Expect = 1e-05
Identities = 39/138 (28%), Positives = 62/138 (44%)
Frame = -3
Query: 868 KKELQYFAXALHEPERPFLAILGGAKVADXILLIETCLIK*MK**LEGVWHTHS*RKPKE 689
+KEL Y A+ P+RPF AI+GG+KV+ I +IE+ L K L G + K +
Sbjct: 255 QKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEK-CDILLLGGGMIFTFYKAQG 313
Query: 688 CRLVIPCMTLRELKL*PNYWXKLRKTMLKFTCPXXXXXXXXXMKMHLVGEANVETGIPDG 509
+ + +L+L + K ++ + P + + IPDG
Sbjct: 314 LSVGSSLVEEDKLELATSLLAKAKEKGVSLLLP-SDVIIADKFAPDANSQVVPASAIPDG 372
Query: 508 WMGLXVGPKSRELFADPI 455
WMGL +GP S F+ +
Sbjct: 373 WMGLDIGPDSVASFSSTL 390
Score = 39.9 bits (89), Expect(2) = 3e-05
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -1
Query: 510 DGWDSXLDRNHES--SSQILLPETKVIVWXGPAGVFEXEKFAGGTRAI 373
DGW LD +S S L T+ ++W GP GVFE +KFA GT +
Sbjct: 371 DGW-MGLDIGPDSVASFSSTLETTQTVIWNGPMGVFEFDKFAVGTEVM 417
Score = 25.8 bits (54), Expect(2) = 3e-05
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 378 AIXDGVVKATSNGTVTIIGGGDTATCCAKWG 286
AI + + G TIIGGGD+ K G
Sbjct: 446 AIAKKLADLSGKGVTTIIGGGDSVAAVEKVG 476
>10_08_0167 -
15370890-15371093,15371588-15371686,15371912-15371996,
15372570-15372619,15372688-15372764,15373282-15373357,
15374103-15374354,15374864-15374931,15375172-15375463,
15376553-15376896,15377517-15377793,15378440-15378506,
15378848-15378900
Length = 647
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -1
Query: 516 LMDGWDSXLDRNHESSSQI--LLPETKVIVWXGPAGVFEXEKFAGGTRAIXDGVVKATSN 343
L+ GW + D + +I L+P K ++W GP E+F+GG + + KA+ +
Sbjct: 342 LLPGW-TPADIGPSTLEKISSLMPLYKKVLWIGPTCFDLTEEFSGGAAQLGRILDKASHD 400
Query: 342 GTVTIIGGGDTATCCAKWGTRG 277
I+ G +A C A G G
Sbjct: 401 SCDVILVG--SAACKAVKGISG 420
>03_03_0274 - 16089322-16089365,16089604-16089616,16090367-16090714,
16090771-16090974,16091403-16091504,16091710-16091741,
16092668-16093655,16094461-16094711,16095786-16097795,
16097903-16097954
Length = 1347
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 459 GSAKSSRDFGPTSSPIHPSGIPVSTLASPTRCIFIXXISCNKINGQVNF 605
G A S + GP IHP PV + T C+ +S + QVN+
Sbjct: 1285 GEAASDNEIGPDGKEIHPGITPV-IIDELTECVCDIILSAGRKERQVNY 1332
>09_03_0089 + 12265916-12267232
Length = 438
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +1
Query: 190 SERAGTPGSTFPSSNSRXAPPPVETCETLSSGSPLGATRCSITTTNDCDGSIGCSLYDTI 369
+++ T S FP S + P+ T + S S L A + TTT+ + S+ T
Sbjct: 220 AQKLPTAASPFPPYTSSSSSTPLST--STPSSSNLAAANANATTTSTAAATTATSVNPTA 277
Query: 370 XDGSGST 390
G+G T
Sbjct: 278 AAGAGDT 284
>01_01_0083 + 631196-631675
Length = 159
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 317 PPPMIVTVPLDVAFTTPSXMARVPPANFSNSNTP 418
PPP VT +TPS PP + S+SNTP
Sbjct: 35 PPPTPVTTDCPPPPSTPSSGYSYPPPSSSSSNTP 68
>02_05_0506 +
29613307-29613601,29613641-29613678,29613679-29613802,
29614358-29614484,29614915-29615002,29615539-29615631,
29616380-29616529
Length = 304
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 293 LAQHVAVSPPPMIVTVPLDVAFTTPSXMARVPPANFSNSNTPAGPXHTITLV 448
LA H+A S P +V VPLD + T ++ SN P H + L+
Sbjct: 210 LANHLASSARPFLVGVPLDCSRTKEQCCCICSTGSYLASNPPC--IHKVALI 259
>06_01_0475 +
3375757-3375800,3375898-3376168,3376252-3376440,
3376816-3376989,3378039-3378218,3378565-3378719,
3379509-3379599,3380023-3380186,3380791-3380845,
3380944-3381066,3381160-3381255,3381706-3381833,
3382407-3382466,3382607-3382896,3383127-3383237,
3383318-3383395,3383487-3383659,3384192-3384296,
3385017-3385112
Length = 860
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Frame = +1
Query: 199 AGTPGSTFPSSNSRXAPPPVETCE--TLSSGSPLGATRCSITTTND-CDGSIGCSLYDTI 369
A TPGS+ N PPP + LSS T T ND +G L DT
Sbjct: 612 AATPGSSLKLPNGVAKPPPAPLADLLDLSSDDAPATTSAPTTAPNDFLQDLLGIGLTDTS 671
Query: 370 XDG 378
G
Sbjct: 672 TAG 674
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 308 AVSPPPMIVTVPLDVAFTTPSXMARVPPANFSNSNTPAGPXHTITLVSGN 457
AV+PPP + P T P+ A PP +NTP P T T ++ N
Sbjct: 3 AVAPPPDGLDPP---PATPPTAAAGTPPLAVPATNTPPNPATTPTPLTPN 49
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 489 PTSSPIHPSGIPVSTLASPTR 551
P+ SPI PS PVS L+ P R
Sbjct: 187 PSPSPIPPSSTPVSALSGPLR 207
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +2
Query: 278 PLVPHLAQH--VAVSPPPMIVTVPLDVAFTTPSXMARVPPANFSNSNTP-AGPXH 433
P +P LA ++P PM VA P A +PP + NS P A P H
Sbjct: 63 PALPGLASPPPTTLTPTPMPPKASPKVAPLPPPAEAVIPPISLGNSGAPDANPDH 117
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 28.3 bits (60), Expect = 8.5
Identities = 27/67 (40%), Positives = 31/67 (46%)
Frame = +2
Query: 215 ALFLRVTPEXLHRQ*RRARPCPLVPHLAQHVAVSPPPMIVTVPLDVAFTTPSXMARVPPA 394
+L LR P L A P P P LA HV + P P VP A T P A VPP
Sbjct: 168 SLALRAPPH-LRAPCGLAPPVPTPPALATHVPMPPAP-APPVPTPPAPTPP---ADVPP- 221
Query: 395 NFSNSNT 415
F+ S+T
Sbjct: 222 RFTVSST 228
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 275 CPLVPHLAQHVAVSPPPMIVTVPLDVAFTTPSXMARVPPANFSNSNTPA 421
C L PHL +SPP +P +A P+ A PP + TPA
Sbjct: 269 CTLAPHLCVPRVLSPP---APMPSALATHVPTPPAPAPPVPTPLAPTPA 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,353,019
Number of Sequences: 37544
Number of extensions: 536126
Number of successful extensions: 1744
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1741
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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