Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_D12
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 29 0.35
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 28 0.80
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 3.2
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 26 4.3
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 25 5.7
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 7.5
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 25 9.9
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 9.9
SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy... 25 9.9
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 25 9.9
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 29.5 bits (63), Expect = 0.35
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EKIYECWNFXIKTFYHFLVVYNYNVIKLINHLID-INKILQFLFHDLKVYTFNPWKF 129
++ YE WN ++ HF ++ + N+I + ++ I + LQ F +F+PW F
Sbjct: 342 KEFYELWNSILQN--HF-IISSRNIIDSLGLYVNKIKEKLQICFEIPPTNSFDPWSF 395
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 28.3 bits (60), Expect = 0.80
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 34 NINNSEYKIAEYWKFPKYIHTYMKIAHGMECKNF 135
N+ E KI E+W+ HT +K++ G F
Sbjct: 4 NVPKEEEKIVEFWREIDAFHTQLKLSQGRPTYTF 37
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 309 HLTCFYYSKNVSEVCT*LNN*LFYT*LCNAY*FNHNKNRMDIDTMKI 449
HL F Y K++ + C+ LN+ L + F HN DIDT+ +
Sbjct: 279 HLFAFRYDKSLGKFCSFLNHNLLSLCSPSGVLFGHN----DIDTIYV 321
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = -2
Query: 251 HFLVVYNYN---VIKLINHLIDINKILQFLFHDLKVYTFNPWKFLHSIPCAIFMYV 93
+ L+ NY+ K+ + L + LQ L H +Y F P F ++ CA+ +V
Sbjct: 148 NLLLAINYSPKTYTKIFDFLRNGRAPLQVLVHHCMLYNFYPEDFQDALWCAVQAHV 203
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 296 EKIYECWNFXIKTFYHFLVVYNYNVIKLINH 204
E I EC K+ ++V YN + LIN+
Sbjct: 280 EAIEECKKLNTKSMLPKIIVTGYNALNLINY 310
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 156 GVYI*SMEVFTFHTMCYFHVCMYVFWKFPVFS 61
GV + E+ TF MC VC + WK + S
Sbjct: 610 GVSTSAEELKTFRAMCKCSVCNFERWKDRIIS 641
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 26 YNVILITVNIKLLNTGNFQNTYIHT*K*HMVWNVKTS 136
Y V+ + N+ L NT +HT H++W +K S
Sbjct: 30 YPVLAVDGNLLLYRFFRSPNTPLHTNYQHVLWALKLS 66
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 210 D*FYYIIIVNYQEMIKCFNXEIPAF 284
D F YI+ + Q+ I CF E AF
Sbjct: 454 DPFRYIVFNDIQDFIVCFESETIAF 478
>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = -2
Query: 251 HFLVVYNYNVIKLINHLIDINKILQFLFHDLKVYTFNPWKFLH 123
H L ++ N + + N + ++QF +++T + WK H
Sbjct: 241 HTLYLFQKNKVSVANTNELLKSLVQFKSEFPEIFTVDEWKAFH 283
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = -1
Query: 129 FTFHTMCYFHVCMYVFWKFPVFSNFIFTVINITL 28
F F C C+ +W F +FS F+ + ++
Sbjct: 202 FVFQIFCCVLWCLDDYWYFSLFSMFMIIALECSV 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,554
Number of Sequences: 5004
Number of extensions: 38281
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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