Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D11
         (447 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0689 + 18746735-18748296,18748401-18748485                       30   0.74 
06_01_1157 - 9843140-9843182,9843214-9843303,9845080-9845408           29   1.7  
11_01_0670 - 5468377-5468414,5468831-5469032,5469120-5469183,546...    27   9.1  

>04_03_0689 + 18746735-18748296,18748401-18748485
          Length = 548

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 175 PTCFGNSLIAMSTAKLMLIAGELKRNQQRVPVQNYY 282
           P  F N+LIA  +  L LIAGE  RN +R    ++Y
Sbjct: 482 PVEFINALIASQSKDLKLIAGEANRNIERERRADFY 517


>06_01_1157 - 9843140-9843182,9843214-9843303,9845080-9845408
          Length = 153

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 91  LRRLCVPYFRRLYLMIINSDLYFRNLLLPTCFGNSLIAMSTAKLMLIAG 237
           LR+  VP+ RRL  ++  S ++      P   G ++  ++ A  +L+AG
Sbjct: 33  LRQAKVPHLRRLMRVLTVSGIFAMKQQQPASSGEAVYTLTPASRLLVAG 81


>11_01_0670 -
           5468377-5468414,5468831-5469032,5469120-5469183,
           5469205-5469275,5475536-5475795,5475976-5476459
          Length = 372

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
 Frame = +1

Query: 82  VYMLRR--LCVPYFRRLYLMIINSDLYFRNLLLPTCFGNSLIAMSTAKLMLIAGELKRNQ 255
           VY+ RR     P F +L  ++++       L          I +  A   L+  E + N 
Sbjct: 248 VYVFRRDLKWCPTFAKLKTLLLDECALICFLQHSPILEKLTIQLQKAPTCLMDSEGQYNT 307

Query: 256 QRVPVQNYY*NYLK--KVECKYENKWQYAILWATLNY 360
             +P  +   N+LK  ++ECK  N W + IL     Y
Sbjct: 308 SELPFVS---NHLKIVEIECKEVNTWVWKILKTLTTY 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,897,370
Number of Sequences: 37544
Number of extensions: 165076
Number of successful extensions: 283
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)