Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D06
         (303 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.23 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   0.93 
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   2.8  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   2.8  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     19   8.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    19   8.7  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.6 bits (51), Expect = 0.23
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 177 YTDISTKQRTHIYLHTTCPYESVKFEPNTR 266
           + + S KQRTH       P E +K EP  +
Sbjct: 367 HVEESDKQRTHQPFLLNIPSEGIKVEPRDK 396


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 0.93
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +3

Query: 180 TDISTKQRT-HIYLHTTCPYESVKFEP 257
           +D    Q T H Y H    Y SVK EP
Sbjct: 27  SDCDKNQNTEHNYTHNNEMYHSVKEEP 53


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 151 VCNYLMLLLSVWHR 110
           VC  ++L+L +W R
Sbjct: 169 VCFMMLLMLEIWRR 182


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 151 VCNYLMLLLSVWHR 110
           VC  ++L+L +W R
Sbjct: 165 VCFMMLLMLEIWRR 178


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 143 ITYINSERNPHVHGYQYE 196
           I  +  E NPH   Y Y+
Sbjct: 194 IVRVPEEDNPHAKLYDYD 211


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -1

Query: 294 YYCHLFLALCV 262
           +YC L + LC+
Sbjct: 288 FYCALIILLCI 298


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,670
Number of Sequences: 336
Number of extensions: 1428
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5412171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)