Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_D06
(303 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 1.1
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 25 3.2
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.2
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 24 4.3
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 24 5.6
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 24 5.6
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 23 7.5
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha... 23 7.5
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 23 7.5
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 23 9.9
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 23 9.9
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 1.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 198 QRTHIYLHTTCPYESVKFEPNTRTVLKTNDNSNS 299
QR +Y H++ P + + + N R L + +SNS
Sbjct: 128 QRNFLYSHSSLPPKIISIDRNNRIKLDNSISSNS 161
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 24.6 bits (51), Expect = 3.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 58 SSXECYCTVKLYIHVPXHGARPIAITLDNYIHQF 159
SS Y + L I + + + A+TL Y+H+F
Sbjct: 668 SSPMAYSLIDLLIVISPYLNQDYAVTLFEYVHEF 701
>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 3.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 211 ICVRCFVLISVYMGITLRIDVCNYLMLLLSVW 116
I +CF G L + + NYLMLL++ W
Sbjct: 27 IAYKCFFTKDQVKGTRL-VRLTNYLMLLVNFW 57
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.2 bits (50), Expect = 4.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 199 NGHIFTYTQHVPTNR 243
+ IF+Y +HVP NR
Sbjct: 28 SNRIFSYAEHVPLNR 42
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 23.8 bits (49), Expect = 5.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 249 FEPNTRTVLKTNDNSNSF 302
+ PNTRTV++ N S+++
Sbjct: 399 YNPNTRTVIEKNSISSAY 416
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 23.8 bits (49), Expect = 5.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 67 RXRSPNVLDDCD 32
R PN+LDDCD
Sbjct: 946 RVEQPNLLDDCD 957
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 23.4 bits (48), Expect = 7.5
Identities = 6/24 (25%), Positives = 16/24 (66%)
Frame = +2
Query: 140 IITYINSERNPHVHGYQYETTDTY 211
+ +++S NP ++ Y++ T+T+
Sbjct: 188 VCLFLDSNSNPRINVYRWSKTETF 211
>SPAC19D5.02c |||peroxisomal membrane protein Pex22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 23.4 bits (48), Expect = 7.5
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +3
Query: 168 IPMYTDISTKQRTHIYLHTTCPYESVKFEPNTRTVLKTNDNSNSF 302
IP+ +S ++T I+ H T + F P+ + +N + + F
Sbjct: 20 IPISCAVSHNEQTEIFPHGTIDIPEMTFRPSDSQIDWSNLSHSDF 64
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 23.4 bits (48), Expect = 7.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 70 IRXRSPNVLDDCD 32
+R R P VLD CD
Sbjct: 37 VRSRDPQVLDSCD 49
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 106 LGRECTALLYNNIRXRSPNVL 44
L +E TA + NN+R + PN++
Sbjct: 140 LYKEITAWIGNNLREKWPNIV 160
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -3
Query: 100 RECTALLYNNIRXRSPNVLDDCDCDWTS 17
++C L YN + P +D C+ D S
Sbjct: 271 KQCLKLTYNLLNKDKPCSMDPCNFDGIS 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,215,051
Number of Sequences: 5004
Number of extensions: 21946
Number of successful extensions: 63
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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