BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P02_pT_D06 (303 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624 29 0.53 04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674... 28 1.2 03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 28 1.6 11_08_0088 + 28283124-28283330,28285639-28286322 27 2.8 12_01_0541 + 4251931-4254141 27 3.7 03_02_0526 + 9173003-9173063,9173190-9173255,9173349-9173446,917... 26 4.9 03_05_0585 + 25869955-25869984,25870092-25870182,25870402-258705... 26 6.5 11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188 25 8.6 08_01_0535 - 4638954-4639127,4639894-4639944,4640287-4640352,464... 25 8.6 >08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624 Length = 528 Score = 29.5 bits (63), Expect = 0.53 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -2 Query: 278 F*HCACVWLEFYRFVGTCCV*VNMCPLFRTDIRVHGDYA 162 F +CA L YR G+ + N+C +F T + V+G YA Sbjct: 388 FMYCAIPALFLYRTYGSMSIMWNICLMFITGMFVNGPYA 426 >04_04_0867 + 28865857-28866657,28866778-28867113,28867248-28867451, 28867567-28867746 Length = 506 Score = 28.3 bits (60), Expect = 1.2 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 165 VIPMYTDISTKQRTHIYLHTTCPYESVKFEPNTRTVLKTN 284 ++ +T++S K RT L TC Y N +LKTN Sbjct: 52 LLEYHTELSRKYRTFRMLTPTCNYVYTVEPANVEHILKTN 91 >03_06_0576 + 34832900-34832911,34833006-34833122,34833752-34833810, 34833901-34833960,34834197-34834250,34834332-34834380, 34834493-34834540,34834889-34834954,34835591-34835641, 34835732-34835851,34835921-34836005,34836428-34836509, 34836666-34836774,34837005-34837051,34837131-34837188, 34839114-34839220,34839700-34839765,34839833-34839879, 34839977-34840042,34840146-34840243,34840344-34840469, 34840551-34840835,34840920-34840985,34841079-34841228 Length = 675 Score = 27.9 bits (59), Expect = 1.6 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +3 Query: 207 HIYLHTTCPYESVKFEPNTRTVL 275 H +H T PY+++ F+P RT+L Sbjct: 479 HANVHGTLPYDNLHFDPVLRTLL 501 >11_08_0088 + 28283124-28283330,28285639-28286322 Length = 296 Score = 27.1 bits (57), Expect = 2.8 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +2 Query: 158 SERNPHVHGYQYETTDTYLLTH 223 +ER+ H H Y + TDT + TH Sbjct: 274 TERDTHKHMYTHPNTDTCMYTH 295 >12_01_0541 + 4251931-4254141 Length = 736 Score = 26.6 bits (56), Expect = 3.7 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -3 Query: 190 LISVYMGITLRIDVCNYLMLLLSVWHRV 107 L + + + L +++ YL L+LS WHRV Sbjct: 382 LARLVISLFLVLELSQYLSLVLSDWHRV 409 >03_02_0526 + 9173003-9173063,9173190-9173255,9173349-9173446, 9173555-9173592,9173679-9173766,9173854-9174129, 9174232-9174456 Length = 283 Score = 26.2 bits (55), Expect = 4.9 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +3 Query: 207 HIYLHTTCPYESVKFEPNTRTVLK 278 H ++H PYE++K +P + +LK Sbjct: 87 HSFVHGRLPYENIKPDPVLKHILK 110 >03_05_0585 + 25869955-25869984,25870092-25870182,25870402-25870551, 25870687-25870774,25871096-25871590,25871755-25871890, 25872117-25872310,25872421-25872529,25872685-25872796, 25873260-25873339,25873503-25873607 Length = 529 Score = 25.8 bits (54), Expect = 6.5 Identities = 10/37 (27%), Positives = 19/37 (51%) Frame = +2 Query: 140 IITYINSERNPHVHGYQYETTDTYLLTHNMSLRIGKI 250 ++ + R PHVHG E + +L H+ + +G + Sbjct: 367 VVEILRKTRFPHVHGVGDEKSPETILDHDRIIWLGDL 403 >11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188 Length = 637 Score = 25.4 bits (53), Expect = 8.6 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = -3 Query: 232 GHVVCK*ICVRCFVLISVYMGITLRIDVCNYLMLLLSVWHRVLGRECTA 86 GH+ VRC V +V GI LR++ + L + HR LGR +A Sbjct: 162 GHLADDGFAVRCDV--TVMGGIELRVEPASSLAVPEPDMHRHLGRLLSA 208 >08_01_0535 - 4638954-4639127,4639894-4639944,4640287-4640352, 4640492-4640557,4640701-4640892,4641282-4641780, 4642009-4642364 Length = 467 Score = 25.4 bits (53), Expect = 8.6 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = +2 Query: 149 YINSERNPHVHGYQYETTDTYLLTHNMSLRIGKIRAKHTH 268 Y++S RN H + + +T L N S G + +H H Sbjct: 127 YMSSSRNDHHTNHHHHQINTPSLMSNSSSNNGVMLQEHQH 166 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,400,541 Number of Sequences: 37544 Number of extensions: 125897 Number of successful extensions: 285 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 279 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 285 length of database: 14,793,348 effective HSP length: 71 effective length of database: 12,127,724 effective search space used: 351703996 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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