Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_D06
(303 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624 29 0.53
04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674... 28 1.2
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 28 1.6
11_08_0088 + 28283124-28283330,28285639-28286322 27 2.8
12_01_0541 + 4251931-4254141 27 3.7
03_02_0526 + 9173003-9173063,9173190-9173255,9173349-9173446,917... 26 4.9
03_05_0585 + 25869955-25869984,25870092-25870182,25870402-258705... 26 6.5
11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188 25 8.6
08_01_0535 - 4638954-4639127,4639894-4639944,4640287-4640352,464... 25 8.6
>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
Length = 528
Score = 29.5 bits (63), Expect = 0.53
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 278 F*HCACVWLEFYRFVGTCCV*VNMCPLFRTDIRVHGDYA 162
F +CA L YR G+ + N+C +F T + V+G YA
Sbjct: 388 FMYCAIPALFLYRTYGSMSIMWNICLMFITGMFVNGPYA 426
>04_04_0867 +
28865857-28866657,28866778-28867113,28867248-28867451,
28867567-28867746
Length = 506
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 165 VIPMYTDISTKQRTHIYLHTTCPYESVKFEPNTRTVLKTN 284
++ +T++S K RT L TC Y N +LKTN
Sbjct: 52 LLEYHTELSRKYRTFRMLTPTCNYVYTVEPANVEHILKTN 91
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 207 HIYLHTTCPYESVKFEPNTRTVL 275
H +H T PY+++ F+P RT+L
Sbjct: 479 HANVHGTLPYDNLHFDPVLRTLL 501
>11_08_0088 + 28283124-28283330,28285639-28286322
Length = 296
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 158 SERNPHVHGYQYETTDTYLLTH 223
+ER+ H H Y + TDT + TH
Sbjct: 274 TERDTHKHMYTHPNTDTCMYTH 295
>12_01_0541 + 4251931-4254141
Length = 736
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 190 LISVYMGITLRIDVCNYLMLLLSVWHRV 107
L + + + L +++ YL L+LS WHRV
Sbjct: 382 LARLVISLFLVLELSQYLSLVLSDWHRV 409
>03_02_0526 +
9173003-9173063,9173190-9173255,9173349-9173446,
9173555-9173592,9173679-9173766,9173854-9174129,
9174232-9174456
Length = 283
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 207 HIYLHTTCPYESVKFEPNTRTVLK 278
H ++H PYE++K +P + +LK
Sbjct: 87 HSFVHGRLPYENIKPDPVLKHILK 110
>03_05_0585 +
25869955-25869984,25870092-25870182,25870402-25870551,
25870687-25870774,25871096-25871590,25871755-25871890,
25872117-25872310,25872421-25872529,25872685-25872796,
25873260-25873339,25873503-25873607
Length = 529
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 140 IITYINSERNPHVHGYQYETTDTYLLTHNMSLRIGKI 250
++ + R PHVHG E + +L H+ + +G +
Sbjct: 367 VVEILRKTRFPHVHGVGDEKSPETILDHDRIIWLGDL 403
>11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188
Length = 637
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -3
Query: 232 GHVVCK*ICVRCFVLISVYMGITLRIDVCNYLMLLLSVWHRVLGRECTA 86
GH+ VRC V +V GI LR++ + L + HR LGR +A
Sbjct: 162 GHLADDGFAVRCDV--TVMGGIELRVEPASSLAVPEPDMHRHLGRLLSA 208
>08_01_0535 -
4638954-4639127,4639894-4639944,4640287-4640352,
4640492-4640557,4640701-4640892,4641282-4641780,
4642009-4642364
Length = 467
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 149 YINSERNPHVHGYQYETTDTYLLTHNMSLRIGKIRAKHTH 268
Y++S RN H + + +T L N S G + +H H
Sbjct: 127 YMSSSRNDHHTNHHHHQINTPSLMSNSSSNNGVMLQEHQH 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,400,541
Number of Sequences: 37544
Number of extensions: 125897
Number of successful extensions: 285
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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