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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D06
         (303 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624           29   0.53 
04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674...    28   1.2  
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338...    28   1.6  
11_08_0088 + 28283124-28283330,28285639-28286322                       27   2.8  
12_01_0541 + 4251931-4254141                                           27   3.7  
03_02_0526 + 9173003-9173063,9173190-9173255,9173349-9173446,917...    26   4.9  
03_05_0585 + 25869955-25869984,25870092-25870182,25870402-258705...    26   6.5  
11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188     25   8.6  
08_01_0535 - 4638954-4639127,4639894-4639944,4640287-4640352,464...    25   8.6  

>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
          Length = 528

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 278 F*HCACVWLEFYRFVGTCCV*VNMCPLFRTDIRVHGDYA 162
           F +CA   L  YR  G+  +  N+C +F T + V+G YA
Sbjct: 388 FMYCAIPALFLYRTYGSMSIMWNICLMFITGMFVNGPYA 426


>04_04_0867 +
           28865857-28866657,28866778-28867113,28867248-28867451,
           28867567-28867746
          Length = 506

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 165 VIPMYTDISTKQRTHIYLHTTCPYESVKFEPNTRTVLKTN 284
           ++  +T++S K RT   L  TC Y       N   +LKTN
Sbjct: 52  LLEYHTELSRKYRTFRMLTPTCNYVYTVEPANVEHILKTN 91


>03_06_0576 +
           34832900-34832911,34833006-34833122,34833752-34833810,
           34833901-34833960,34834197-34834250,34834332-34834380,
           34834493-34834540,34834889-34834954,34835591-34835641,
           34835732-34835851,34835921-34836005,34836428-34836509,
           34836666-34836774,34837005-34837051,34837131-34837188,
           34839114-34839220,34839700-34839765,34839833-34839879,
           34839977-34840042,34840146-34840243,34840344-34840469,
           34840551-34840835,34840920-34840985,34841079-34841228
          Length = 675

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 207 HIYLHTTCPYESVKFEPNTRTVL 275
           H  +H T PY+++ F+P  RT+L
Sbjct: 479 HANVHGTLPYDNLHFDPVLRTLL 501


>11_08_0088 + 28283124-28283330,28285639-28286322
          Length = 296

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 158 SERNPHVHGYQYETTDTYLLTH 223
           +ER+ H H Y +  TDT + TH
Sbjct: 274 TERDTHKHMYTHPNTDTCMYTH 295


>12_01_0541 + 4251931-4254141
          Length = 736

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 190 LISVYMGITLRIDVCNYLMLLLSVWHRV 107
           L  + + + L +++  YL L+LS WHRV
Sbjct: 382 LARLVISLFLVLELSQYLSLVLSDWHRV 409


>03_02_0526 +
           9173003-9173063,9173190-9173255,9173349-9173446,
           9173555-9173592,9173679-9173766,9173854-9174129,
           9174232-9174456
          Length = 283

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 207 HIYLHTTCPYESVKFEPNTRTVLK 278
           H ++H   PYE++K +P  + +LK
Sbjct: 87  HSFVHGRLPYENIKPDPVLKHILK 110


>03_05_0585 +
           25869955-25869984,25870092-25870182,25870402-25870551,
           25870687-25870774,25871096-25871590,25871755-25871890,
           25872117-25872310,25872421-25872529,25872685-25872796,
           25873260-25873339,25873503-25873607
          Length = 529

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 140 IITYINSERNPHVHGYQYETTDTYLLTHNMSLRIGKI 250
           ++  +   R PHVHG   E +   +L H+  + +G +
Sbjct: 367 VVEILRKTRFPHVHGVGDEKSPETILDHDRIIWLGDL 403


>11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188
          Length = 637

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 232 GHVVCK*ICVRCFVLISVYMGITLRIDVCNYLMLLLSVWHRVLGRECTA 86
           GH+      VRC V  +V  GI LR++  + L +     HR LGR  +A
Sbjct: 162 GHLADDGFAVRCDV--TVMGGIELRVEPASSLAVPEPDMHRHLGRLLSA 208


>08_01_0535 -
           4638954-4639127,4639894-4639944,4640287-4640352,
           4640492-4640557,4640701-4640892,4641282-4641780,
           4642009-4642364
          Length = 467

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 149 YINSERNPHVHGYQYETTDTYLLTHNMSLRIGKIRAKHTH 268
           Y++S RN H   + +   +T  L  N S   G +  +H H
Sbjct: 127 YMSSSRNDHHTNHHHHQINTPSLMSNSSSNNGVMLQEHQH 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,400,541
Number of Sequences: 37544
Number of extensions: 125897
Number of successful extensions: 285
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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