Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_D06
(303 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7) 31 0.14
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.55
SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 29 0.95
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.95
SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24) 27 2.9
SB_48403| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_8973| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_8941| Best HMM Match : VWA (HMM E-Value=0) 26 6.7
SB_33123| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=7.9) 25 8.9
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 25 8.9
SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.9
SB_13431| Best HMM Match : Seryl_tRNA_N (HMM E-Value=2.3) 25 8.9
>SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)
Length = 533
Score = 31.5 bits (68), Expect = 0.14
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -3
Query: 229 HVVCK*ICVRCFVLISVYMGITLRIDVCNYLMLLLSVWHRVL 104
H+ C +CV VLIS+Y + +DV L V HRVL
Sbjct: 486 HITCSCLCVSHRVLISMYSPWRVHVDVFPIRYSCLCVPHRVL 527
>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 29.5 bits (63), Expect = 0.55
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 108 TRCQTDSNNIR*LHTSILSVIPMYTDISTKQRTHIYLHTTCPYE-SVKFEPNTRTVLKTN 284
TR +TD+ TS TD STK TH HT+ E S + E T TV T+
Sbjct: 91 TRTKTDTATKTHTETSTAEHTTTKTDTSTK--THYTTHTSTATETSTQVEKVTATVTTTD 148
Query: 285 DNS 293
NS
Sbjct: 149 VNS 151
>SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 1055
Score = 28.7 bits (61), Expect = 0.95
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 211 ICVRCFVLISVYMGITLRIDVCNYLMLLLSVWHRVL 104
+C CF+L+ M +LR+ +C ++ + S+ H VL
Sbjct: 148 VCT-CFILVIYTMLHSLRLYICIFITVAFSIAHEVL 182
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 28.7 bits (61), Expect = 0.95
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 150 TSILSVIPMYTD--ISTKQRTHIYLHTTCPYESVKFEPNTRTVLKTNDNS 293
TS +IP+ D I K+ + LHT P V PNT TV T+D++
Sbjct: 3145 TSKTIMIPINNDKDIEPKEDFTVQLHTNDP--RVSLNPNTATVFITDDDA 3192
>SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)
Length = 428
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 170 PHVHGYQYETTDTYLLTHNMSLRIGKIRAKHT 265
PH+ GY Y+ T++Y + RIG + +HT
Sbjct: 384 PHLQGYFYDFTESY--CNERGRRIGFQQGRHT 413
>SB_48403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 196 FVLISVYMGITLRIDVCNYLMLLLSVWHR-VLGRECTALLYN 74
F+++++ G+T+ + ++L+S+W L + T L+N
Sbjct: 25 FIIVAILNGVTILPAIVLNALILISIWRTPALHKPSTVFLFN 66
>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 165 VIPMYTDISTKQRTHIYLHTTCPYESVKFEPNTRTVLKT 281
+IP+ +D +T THI P E + EP T + +
Sbjct: 586 MIPLQSDYNTSTNTHILTCYMFPQEPLSEEPEDNTSMNS 624
>SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +1
Query: 16 YLSNHNHNHPKH*GSSXECYCTVKLYIHVPXHGARPIAITLDNYIHQF*A*SPCTRISVR 195
++ +H + H + T++ +H+ HG R + T+D H +P T++ ++
Sbjct: 352 HIQHHGPRYTSH-TMDQGTHPTIRTKVHIQHHGPRYTSNTMDQGTHP----TPWTKVHIQ 406
Query: 196 NNG 204
+ G
Sbjct: 407 DYG 409
>SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 144 LHTSILSVIPMYTDISTKQRTHIYLHTT 227
L TS ++ P TDI Q +H Y H T
Sbjct: 39 LRTSRYNIHPAITDIPLLQTSHYYRHPT 66
>SB_8973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/34 (29%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 196 FVLISVY-MGITLRIDVCNYLMLLLSVWHRVLGR 98
FV+ ++ + ITL + + L+++L++W V G+
Sbjct: 29 FVIFMIFALAITLLLALVGNLLIILAIWKNVSGK 62
>SB_8941| Best HMM Match : VWA (HMM E-Value=0)
Length = 2180
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 176 VHGYQYETTDTYLLTHNMSL 235
VHG QYE+TD L N+ L
Sbjct: 1209 VHGNQYESTDYEALERNLRL 1228
>SB_33123| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=7.9)
Length = 271
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 213 YLHTTCPY-ESVKFEPNTRTVLKTN 284
YLHTTCPY ++ N L TN
Sbjct: 41 YLHTTCPYPRRLETRENNFNSLVTN 65
>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
Length = 540
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 229 HVVCK*ICVRCFVLISVYMGITLRIDVCNYLMLLLSVWHRVLGRECT 89
H+ C +CV VL+S+ +DV V H VL C+
Sbjct: 34 HITCSCLCVPHHVLMSMCSSSRAHVDVFPIACSCRCVSHHVLMSMCS 80
>SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 169 ITLRIDVCNYLMLLLSVWHRVLGRECTALLYN 74
++LR+ C+ L L + +H EC +LY+
Sbjct: 811 LSLRVRACHVLSLQRNAYHACSFPECVLVLYS 842
>SB_13431| Best HMM Match : Seryl_tRNA_N (HMM E-Value=2.3)
Length = 743
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 150 TSILSVIPMYTD-ISTKQRTHIYLHTTCPYESVKFEPNTRTVLKTNDNSNSF 302
+ + S+ P + D +S RTH L T ++ + +P + T +D +N F
Sbjct: 227 SELSSLFPHFADRVSDSSRTHGTLKTDLFEKNDEKQPTSATGASQSDGANDF 278
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,411,400
Number of Sequences: 59808
Number of extensions: 175199
Number of successful extensions: 436
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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